Factsheet for Os04t0367400-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0226300-01
Os01t0254000-01
Os01t0338000-01
Os01t0736900-01
Os01t0761000-01
Os02t0265900-01
Os02t0269000-01
Os05t0526400-01
Os05t0529000-01
Os06t0225000-00
Os06t0503400-01
Os10t0456500-02
Os12t0560300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54120.1	Os01t0761000-01	AT1G52220.1	21798944
AT3G54120.1	Os01t0254000-01	AT1G56330.1	21798944
AT3G54120.1	Os01t0338000-01	AT1G56330.1	21798944
AT3G54120.1	Os06t0225000-00	AT1G56330.1	21798944
AT3G54120.1	Os12t0560300-01	AT1G56330.1	21798944
AT3G54120.1	Os02t0269000-01	AT2G20130.1	21798944
AT3G54120.1	Os05t0529000-01	AT2G20130.1	21798944
AT3G54120.1	Os10t0456500-02	AT3G53180.1	21798944
AT3G54120.1	Os01t0226300-01	AT4G11220.1	21798944
AT3G54120.1	Os01t0736900-01	AT4G11220.1	21798944
AT3G54120.1	Os02t0265900-01	AT4G11220.1	21798944
AT3G54120.1	Os05t0526400-01	AT4G11220.1	21798944
AT3G54120.1	Os06t0503400-01	AT4G11220.1	21798944
AT3G54120.1	Os01t0226300-01	AT5G41600.1	21798944
AT3G54120.1	Os01t0736900-01	AT5G41600.1	21798944
AT3G54120.1	Os02t0265900-01	AT5G41600.1	21798944
AT3G54120.1	Os05t0526400-01	AT5G41600.1	21798944
AT3G54120.1	Os06t0503400-01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78555	Sorghum	extracellular	67.14	64.71
Zm00001d039213_P001	Maize	golgi, plasma membrane, plastid	56.34	51.28
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	45.07	45.93
VIT_08s0007g01720.t01	Wine grape	plasma membrane	43.66	44.5
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	43.66	44.5
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	43.19	44.02
GSMUA_Achr10P...	Banana	plasma membrane	47.42	43.91
KRH75801	Soybean	plasma membrane	42.25	43.06
Os01t0851300-01	Rice	golgi, plasma membrane, vacuole	39.91	41.87
CDX67589	Canola	golgi, plasma membrane, vacuole	39.44	41.38
Bra003171.1-P	Field mustard	plasma membrane	38.97	40.89
CDY51584	Canola	plasma membrane	38.97	40.89
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	46.48	40.08
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	37.09	38.92
Os04t0670000-01	Rice	plasma membrane	36.15	38.69
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	35.68	37.07
CDX78209	Canola	golgi, plasma membrane, vacuole	35.68	37.07
CDX73507	Canola	cytosol, golgi, plasma membrane	35.21	36.59
GSMUA_Achr6P33560_001	Banana	plasma membrane	42.72	34.47
Os01t0226300-01	Rice	plasma membrane	26.76	32.02
Os03t0336600-02	Rice	plasma membrane	33.33	30.74
Os02t0265900-01	Rice	cytosol, peroxisome, plasma membrane	32.86	30.43
Os01t0139000-00	Rice	plasma membrane	29.11	29.11
Os01t0736900-01	Rice	plasma membrane	31.92	26.88
Os01t0691400-00	Rice	cytosol, peroxisome	28.64	26.41
Os05t0526400-01	Rice	plasma membrane	30.99	26.29
Os05t0312500-01	Rice	plasma membrane	30.52	25.9
Os06t0503400-01	Rice	plasma membrane	30.99	24.91
Os07t0142000-01	Rice	plasma membrane	24.88	21.54
Os03t0781700-01	Rice	cytosol, peroxisome, plasma membrane	23.0	19.84

Protein Annotations

MapMan:13.7.2.1	EntrezGene:4335583	EMBL:AK061121	ProteinID:BAF14470.1	ProteinID:BAS88792.1	ProteinID:EEE60830.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	EnsemblPlantsGene:Os04g0367400	EnsemblPlants:Os04t0367400-02	PFAM:PF02453
PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF65	UniProt:Q0JDW7	InterPro:Reticulon	TMHMM:TMhelix
UniParc:UPI0000DD902A	RefSeq:XP_015634048.1	SEG:seg	:	:	:

Description

Similar to OSIGBa0092J07.5 protein. (Os04t0367400-01);Reticulon family protein. (Os04t0367400-02)

Coordinates

chr4:+:17838060..17839900

Molecular Weight (calculated)

23843.3 Da

IEP (calculated)

5.693

GRAVY (calculated)

0.471

Length

213 amino acids

Sequence
(BLAST)

001: MDRRDDSCCP GGGGGVSSLI GEFVGDVVMW RRGDVSACLL AATVSGWLLF GSGGYTFLSL ASNVLLLLLT VLFLWAKAAR LLNRPEPPIP EMRISQQVVN
101: EVAALLHSGM NTVFSVFHDI ALGKDSVLFY QVFLSLWIIS IIGSLTDFTT LCYTSIVAVL TIPALYQKYE ECIDRYMRFA YLNLQMYEMV YERFSAKCFH
201: RARDLVIEVL KEP

Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)

001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS

Arabidopsis Description

RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.