Factsheet for Os01t0851300-01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, vacuole

Predictor Summary:

plastid 1
golgi 2
nucleus 1
extracellular 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0226300-01
Os01t0254000-01
Os01t0338000-01
Os01t0736900-01
Os01t0761000-01
Os02t0265900-01
Os02t0269000-01
Os05t0526400-01
Os05t0529000-01
Os06t0225000-00
Os06t0503400-01
Os10t0456500-02
Os12t0560300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54120.1	Os01t0761000-01	AT1G52220.1	21798944
AT3G54120.1	Os01t0254000-01	AT1G56330.1	21798944
AT3G54120.1	Os01t0338000-01	AT1G56330.1	21798944
AT3G54120.1	Os06t0225000-00	AT1G56330.1	21798944
AT3G54120.1	Os12t0560300-01	AT1G56330.1	21798944
AT3G54120.1	Os02t0269000-01	AT2G20130.1	21798944
AT3G54120.1	Os05t0529000-01	AT2G20130.1	21798944
AT3G54120.1	Os10t0456500-02	AT3G53180.1	21798944
AT3G54120.1	Os01t0226300-01	AT4G11220.1	21798944
AT3G54120.1	Os01t0736900-01	AT4G11220.1	21798944
AT3G54120.1	Os02t0265900-01	AT4G11220.1	21798944
AT3G54120.1	Os05t0526400-01	AT4G11220.1	21798944
AT3G54120.1	Os06t0503400-01	AT4G11220.1	21798944
AT3G54120.1	Os01t0226300-01	AT5G41600.1	21798944
AT3G54120.1	Os01t0736900-01	AT5G41600.1	21798944
AT3G54120.1	Os02t0265900-01	AT5G41600.1	21798944
AT3G54120.1	Os05t0526400-01	AT5G41600.1	21798944
AT3G54120.1	Os06t0503400-01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03891	Sorghum	golgi, peroxisome, plasma membrane	67.98	65.09
Zm00001d042846_P001	Maize	plasma membrane	66.01	63.81
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	41.87	40.67
Os04t0367400-02	Rice	plasma membrane	41.87	39.91
VIT_08s0007g01720.t01	Wine grape	plasma membrane	39.9	38.76
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	39.9	38.76
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	39.41	38.28
KRH75801	Soybean	plasma membrane	38.92	37.8
GSMUA_Achr10P...	Banana	plasma membrane	40.89	36.09
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	42.36	34.82
CDY51584	Canola	plasma membrane	34.48	34.48
Bra003171.1-P	Field mustard	plasma membrane	33.5	33.5
CDX67589	Canola	golgi, plasma membrane, vacuole	33.5	33.5
Os04t0670000-01	Rice	plasma membrane	32.51	33.17
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	32.51	32.51
CDX73507	Canola	cytosol, golgi, plasma membrane	32.51	32.2
CDX78209	Canola	golgi, plasma membrane, vacuole	31.03	30.73
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	31.03	30.73
GSMUA_Achr6P33560_001	Banana	plasma membrane	39.9	30.68
Os03t0336600-02	Rice	plasma membrane	33.0	29.0
Os05t0312500-01	Rice	plasma membrane	35.47	28.69
Os02t0265900-01	Rice	cytosol, peroxisome, plasma membrane	32.02	28.26
Os01t0226300-01	Rice	plasma membrane	24.63	28.09
Os01t0139000-00	Rice	plasma membrane	27.59	26.29
Os01t0736900-01	Rice	plasma membrane	32.02	25.69
Os01t0691400-00	Rice	cytosol, peroxisome	28.57	25.11
Os07t0142000-01	Rice	plasma membrane	30.05	24.8
Os03t0781700-01	Rice	cytosol, peroxisome, plasma membrane	29.56	24.29
Os06t0503400-01	Rice	plasma membrane	31.53	24.15
Os05t0526400-01	Rice	plasma membrane	29.56	23.9

Protein Annotations

MapMan:13.7.2.1	EntrezGene:9271780	EMBL:AK101770	ProteinID:BAD82652.1	ProteinID:BAH91385.1	ProteinID:BAS75250.1
ProteinID:EAZ14165.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	EnsemblPlantsGene:Os01g0851300	EnsemblPlants:Os01t0851300-01
PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF128	UniProt:Q5N7A0	InterPro:Reticulon
TMHMM:TMhelix	UniParc:UPI000049EACD	RefSeq:XP_015633775.1	SEG:seg	:	:

Description

Reticulon family protein. (Os01t0851300-01)

Coordinates

chr1:-:36652530..36654649

Molecular Weight (calculated)

21944.3 Da

IEP (calculated)

9.809

GRAVY (calculated)

0.558

Length

203 amino acids

Sequence
(BLAST)

001: MDASDQGCRL LGAQRSLHGL LGGGAMADVV LWRRKEVAGW SLAAVAASWV LFYCLPGYTL LSFVSSVLMI VLVVLFVWAK AARLLNRPPP PVPLIKISED
101: SMSKAAAAVG NILHKALQGF ENIAHGKDSS LFYKMVSVLL LISIVGRVTD LITLVYACLV LALTIPALVD KYEENIAKFL NQASANIQAC GQAWKAYKSK
201: IKN

Best Arabidopsis Sequence Match ( AT5G41600.1 )
(BLAST)

001: MVEDHKHEES ILEKIVEKIH GHGDSSSLSD SDDDKKSTSS SSSSFKSKIY RLFGREKPVH KVLGGGKPAD IFLWRNKKVS GGVLGAVTAS WVLFELFEYH
101: LLAFLCHFAI FALAALFLWS NACTFIHKST PHIPEVHIPE DPILQLVSGL RIEINRGLTL LRNIASGKDV KKFILVIAGL WVLSIIGSCY NFLTLFYTAT
201: VLLFTIPVLY EKYEDKVDAY GEKAMREIKK QYAVLDEKVL RKVISKIPRG ALNKKKD

Arabidopsis Description

RTNLB4Reticulon-like protein B4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS0]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.