CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89811
EER91525
EES00709
EES02699
EES15193
EES19841
EES19854
KXG23692
KXG28257
KXG31516
KXG33320
OQU84758
OQU84787
OQU87593

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54120.1	OQU87593	AT1G52220.1	21798944
AT3G54120.1	EES00709	AT1G56330.1	21798944
AT3G54120.1	EES02699	AT1G56330.1	21798944
AT3G54120.1	EES15193	AT1G56330.1	21798944
AT3G54120.1	KXG23692	AT1G56330.1	21798944
AT3G54120.1	KXG28257	AT1G56330.1	21798944
AT3G54120.1	EES19854	AT2G20130.1	21798944
AT3G54120.1	OQU84787	AT2G20130.1	21798944
AT3G54120.1	EER91525	AT3G53180.1	21798944
AT3G54120.1	EER89811	AT4G11220.1	21798944
AT3G54120.1	EES19841	AT4G11220.1	21798944
AT3G54120.1	KXG31516	AT4G11220.1	21798944
AT3G54120.1	KXG33320	AT4G11220.1	21798944
AT3G54120.1	OQU84758	AT4G11220.1	21798944
AT3G54120.1	EER89811	AT5G41600.1	21798944
AT3G54120.1	EES19841	AT5G41600.1	21798944
AT3G54120.1	KXG31516	AT5G41600.1	21798944
AT3G54120.1	KXG33320	AT5G41600.1	21798944
AT3G54120.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042846_P001	Maize	plasma membrane	90.57	91.43
Os01t0851300-01	Rice	golgi, plasma membrane, vacuole	65.09	67.98
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	44.81	45.45
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	44.81	45.45
VIT_08s0007g01720.t01	Wine grape	plasma membrane	44.34	44.98
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	43.4	44.02
KRH75801	Soybean	plasma membrane	43.4	44.02
GSMUA_Achr10P...	Banana	plasma membrane	47.17	43.48
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	50.0	42.91
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	37.74	39.41
CDY51584	Canola	plasma membrane	37.26	38.92
OQU78555	Sorghum	extracellular	40.09	38.46
CDX67589	Canola	golgi, plasma membrane, vacuole	36.79	38.42
Bra003171.1-P	Field mustard	plasma membrane	36.32	37.93
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	34.91	36.1
CDX73507	Canola	cytosol, golgi, plasma membrane	34.91	36.1
CDX78209	Canola	golgi, plasma membrane, vacuole	34.91	36.1
GSMUA_Achr6P33560_001	Banana	plasma membrane	42.92	34.47
EES11624	Sorghum	plasma membrane	31.6	33.84
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	34.91	29.84
EER92307	Sorghum	peroxisome	31.13	28.95
KXG33168	Sorghum	golgi, peroxisome, plasma membrane	27.83	27.31
EES02516	Sorghum	peroxisome, plastid	27.83	27.06
OQU84758	Sorghum	cytosol, peroxisome, plasma membrane	29.25	26.72
KXG33320	Sorghum	cytosol, nucleus, plasma membrane	32.08	26.36
EES19841	Sorghum	cytosol, nucleus, plasma membrane	30.19	25.1
EES19907	Sorghum	cytosol, peroxisome, plasma membrane	26.42	24.78
KXG31516	Sorghum	cytosol, nucleus, plasma membrane	32.55	24.3
EER89811	Sorghum	peroxisome	28.3	23.44
EER90788	Sorghum	cytosol, nucleus, plasma membrane	24.06	20.65
KXG34376	Sorghum	plasma membrane	25.94	17.52

Protein Annotations

MapMan:13.7.2.1	EntrezGene:8058915	UniProt:C5XPU9	EnsemblPlants:EES03891	ProteinID:EES03891	ProteinID:EES03891.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994
PANTHER:PTHR10994:SF128	InterPro:Reticulon	EnsemblPlantsGene:SORBI_3003G358200	TMHMM:TMhelix	UniParc:UPI0001A851F3	RefSeq:XP_002458771.1

Description

hypothetical protein

Coordinates

chr3:-:67608277..67610605

Molecular Weight (calculated)

23266.0 Da

IEP (calculated)

9.034

GRAVY (calculated)

0.446

Length

212 amino acids

Sequence
(BLAST)

001: MDSPCQSCRL FGAQRSPHDL LGGGAVADVV LWRRKELAGG MLAAVVASWA LFYCVPGNTL LSFVSQVLMI LLTVLFVWAK AAQLLNRAPP PIPLMKISDE
101: SMSEAAEIVG SFMNKVLKDF ENIALGKDSS LFYKVAFVLL LTSIVGRLTD LITLVYTSVV IALTVPALLE KSEEHIVRSF KKASIYVQAC GRACKEYKCN
201: MTNMISETKK LR

Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)

001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS

Arabidopsis Description

RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.