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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER89811
EER91363
EER92238
EER93147
EER93195
EER99823
EES00126
EES00703
EES01977
EES03240
EES03339
EES04366
EES04687
EES10337
EES11733
EES17764
EES18791
EES19652
EES19841
KXG24074
KXG31516
KXG33320
KXG37644
OQU77594
OQU81657
OQU84758
OQU86697
OQU87114
OQU88745

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 EES00703 AT1G09330.1 21798944
AT4G11220.1 EES17764 AT1G09330.1 21798944
AT4G11220.1 EER93147 AT3G59500.1 21798944
AT4G11220.1 EES04687 AT3G59500.1 21798944
AT4G11220.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EES00126 AT1G55190.1 21798944
AT5G41600.1 OQU77594 AT1G55190.1 21798944
AT5G41600.1 OQU86697 AT1G77350.1 21798944
AT5G41600.1 EES04366 AT2G03120.1 21798944
AT5G41600.1 KXG37644 AT2G03120.1 21798944
AT5G41600.1 OQU87114 AT2G03120.1 21798944
AT5G41600.1 OQU81657 AT2G39960.1 21798944
AT5G41600.1 EES10337 AT2G46890.1 21798944
AT5G41600.1 EES03240 AT3G02420.1 21798944
AT5G41600.1 EES03339 AT3G02420.1 21798944
AT5G41600.1 EES18791 AT3G02420.1 21798944
AT5G41600.1 EER92238 AT3G07950.1 21798944
AT5G41600.1 EER99823 AT3G07950.1 21798944
AT5G41600.1 EES11733 AT3G07950.1 21798944
AT5G41600.1 EES01977 AT3G27080.1 21798944
AT5G41600.1 EER93195 AT3G46060.1 21798944
AT5G41600.1 EES19652 AT3G46060.1 21798944
AT5G41600.1 OQU88745 AT3G46060.1 21798944
AT5G41600.1 EER93147 AT3G59500.1 21798944
AT5G41600.1 EES04687 AT3G59500.1 21798944
AT5G41600.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EER89811 AT5G41600.1 21798944
AT5G41600.1 EES19841 AT5G41600.1 21798944
AT5G41600.1 KXG31516 AT5G41600.1 21798944
AT5G41600.1 KXG33320 AT5G41600.1 21798944
AT5G41600.1 OQU84758 AT5G41600.1 21798944
AT5G41600.1 EER91363 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d043551_P003 Maize plasma membrane 94.19 94.55
Zm00001d012776_P001 Maize extracellular 92.25 94.07
Os01t0736900-01 Rice plasma membrane 86.05 87.75
EES19841 Sorghum cytosol, nucleus, plasma membrane 82.95 83.92
TraesCS3A01G278800.1 Wheat golgi 79.46 82.66
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 79.46 82.66
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 81.4 82.35
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 80.62 82.21
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 67.44 69.05
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 67.83 68.63
Solyc03g007740.2.1 Tomato nucleus 66.28 67.06
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 63.95 66.0
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 65.12 65.88
KRH41254 Soybean cytosol, nucleus, plasma membrane 64.34 65.35
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 63.57 65.34
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 67.05 65.28
CDY38194 Canola cytosol, nucleus, plasma membrane 62.79 64.8
KRH40357 Soybean endoplasmic reticulum 64.34 64.59
KRH59988 Soybean mitochondrion 63.57 64.57
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 67.44 64.44
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 63.18 64.43
Solyc01g095200.2.1 Tomato plastid 65.5 64.26
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 62.4 64.14
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 62.4 64.14
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 62.02 64.0
KRH00872 Soybean endoplasmic reticulum 63.95 63.71
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 66.67 63.7
KRH06560 Soybean endoplasmic reticulum 63.18 63.67
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 62.4 63.64
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 63.18 63.42
KRG99174 Soybean endoplasmic reticulum, plasma membrane 21.32 63.22
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 62.4 63.14
CDX79993 Canola cytosol, peroxisome, plasma membrane 60.47 62.15
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 60.47 62.15
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 63.18 61.98
Bra019285.1-P Field mustard cytosol 64.34 61.94
CDY10954 Canola cytosol 64.73 61.85
AT4G23630.2 Thale cress nucleus 65.89 61.82
Bra000739.1-P Field mustard cytosol 63.57 61.42
CDY42012 Canola cytosol, peroxisome, plasma membrane 59.69 61.35
CDX90792 Canola cytosol, peroxisome, plasma membrane 63.18 61.05
KXG31516 Sorghum cytosol, nucleus, plasma membrane 67.05 60.92
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 63.57 60.52
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 59.69 60.39
CDY44123 Canola cytosol, nucleus, plasma membrane 63.95 59.78
CDY57657 Canola cytosol, nucleus, plasma membrane 63.57 59.64
CDY52012 Canola cytosol, peroxisome, plasma membrane 58.53 59.45
Bra013717.1-P Field mustard nucleus 63.57 59.42
CDY24806 Canola cytosol 62.79 59.12
AT4G11220.1 Thale cress nucleus 62.02 59.04
CDY41666 Canola cytosol 62.79 58.7
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 57.75 58.66
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 57.75 58.66
CDY53913 Canola cytosol, peroxisome, plasma membrane 57.75 58.66
KRH35223 Soybean cytosol, nucleus, plasma membrane 56.59 58.4
Bra010539.1-P Field mustard cytosol 60.85 58.36
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 56.2 57.31
CDY13240 Canola cytosol, peroxisome, plasma membrane 34.88 55.9
KXG21632 Sorghum nucleus, peroxisome, plasma membrane 52.33 54.44
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.4 53.33
KRH48008 Soybean cytosol, peroxisome, plasma membrane 64.73 53.18
CDY62522 Canola cytosol 16.28 52.5
CDY05135 Canola mitochondrion 62.02 51.12
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 45.35 50.43
EER89811 Sorghum peroxisome 49.61 50.0
AT4G01230.2 Thale cress cytosol 46.12 48.77
Bra037369.1-P Field mustard cytosol 43.8 46.5
CDY48510 Canola cytosol 43.8 46.5
CDY07184 Canola cytosol, peroxisome, plasma membrane 43.8 46.5
EER90788 Sorghum cytosol, nucleus, plasma membrane 42.64 44.53
EES19907 Sorghum cytosol, peroxisome, plasma membrane 36.82 42.04
KRG91601 Soybean mitochondrion 55.04 41.76
Bra035242.1-P Field mustard cytosol 30.62 39.5
KXG33168 Sorghum golgi, peroxisome, plasma membrane 32.56 38.89
CDX86802 Canola cytosol, nucleus, peroxisome 36.05 37.96
EES02516 Sorghum peroxisome, plastid 31.4 37.16
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 25.58 36.67
EES11624 Sorghum plasma membrane 27.13 35.35
EER92307 Sorghum peroxisome 28.68 32.46
EES03891 Sorghum golgi, peroxisome, plasma membrane 26.36 32.08
CDX89122 Canola extracellular, mitochondrion 18.22 30.72
KXG34376 Sorghum plasma membrane 37.21 30.57
OQU78555 Sorghum extracellular 25.19 29.41
Protein Annotations
EnsemblPlants:KXG33320EnsemblPlantsGene:SORBI_3003G288600GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF99PFAM:PF02453PFscan:PS50845ProteinID:KXG33320ProteinID:KXG33320.1
SEG:segTMHMM:TMhelixUniParc:UPI0001C80ABCUniProt:A0A1B6Q5Y2MapMan:13.7.2.1:
Description
hypothetical protein
Coordinates
chr3:+:62159714..62165803
Molecular Weight (calculated)
28866.3 Da
IEP (calculated)
8.802
GRAVY (calculated)
0.033
Length
258 amino acids
Sequence
(BLAST)
001: MADHKEEPVL ESVMDKITEK FHGGDSTSSS DSDDEKKKKG SSSASAAEAV KAKMYRLFGR ERPVHSVLGG GKPADLVLWR NKKISGGVLA GATAIWLLFE
101: VMEYHLLTLL CHSLILSLAI LFLWSNASTF INKSPPNIPE VKIPEDVAVN VALQLRYEIN RGFATLREIG HGRDLKKFLI VIAGLWLLSV LGSCCNFLTL
201: FYIVFVALYT IPVLYEKYED KVDAFGEKAM IELKKYYAIF DEKCLSKIPK GPLKDKKY
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.