Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
26371478
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 96.47 | 96.47 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 77.25 | 77.87 |
| Os01t0226300-01 | Rice | plasma membrane | 47.06 | 67.42 |
| Zm00001d043551_P003 | Maize | plasma membrane | 67.45 | 66.93 |
| Solyc01g095200.2.1 | Tomato | plastid | 69.02 | 66.92 |
| Os01t0736900-01 | Rice | plasma membrane | 66.27 | 66.8 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 67.06 | 66.28 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 67.06 | 66.28 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 65.1 | 66.14 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 65.1 | 66.14 |
| Zm00001d012776_P001 | Maize | extracellular | 65.1 | 65.61 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 67.45 | 65.4 |
| Os05t0526400-01 | Rice | plasma membrane | 64.31 | 65.34 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 55.69 | 64.84 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 63.92 | 64.68 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 68.24 | 64.44 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 64.31 | 64.31 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 63.53 | 64.03 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 63.92 | 63.92 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 61.96 | 63.71 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 62.75 | 63.49 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 61.96 | 63.45 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 62.75 | 63.24 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 62.75 | 62.99 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 62.35 | 62.6 |
| TraesCS3A01G278800.1 | Wheat | golgi | 60.78 | 62.5 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.39 | 62.1 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 57.25 | 58.4 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 57.25 | 58.4 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 62.35 | 56.99 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 63.53 | 56.64 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 63.14 | 56.29 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 62.35 | 55.99 |
| Zm00001d020229_P001 | Maize | plasma membrane | 32.94 | 55.26 |
| Zm00001d016041_P001 | Maize | extracellular | 48.63 | 53.91 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 48.63 | 53.91 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 63.53 | 52.94 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 47.84 | 52.59 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 51.37 | 51.98 |
| Zm00001d020729_P001 | Maize | plasma membrane | 19.22 | 51.58 |
| EER89811 | Sorghum | peroxisome | 51.76 | 51.56 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 52.16 | 51.15 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 52.16 | 51.15 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 52.16 | 51.15 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 62.75 | 50.96 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 51.76 | 50.57 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 63.53 | 50.31 |
| Os06t0503400-01 | Rice | plasma membrane | 51.76 | 49.81 |
| Solyc06g082740.2.1 | Tomato | nucleus | 43.92 | 48.91 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 49.41 | 48.28 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 45.88 | 47.95 |
| HORVU7Hr1G081290.4 | Barley | plastid | 41.57 | 45.89 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 52.55 | 44.67 |
| Solyc12g006290.1.1 | Tomato | nucleus | 39.61 | 43.35 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 25.49 | 43.33 |
| KRG91601 | Soybean | mitochondrion | 56.86 | 42.65 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 35.69 | 41.18 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 33.33 | 40.67 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 22.35 | 40.14 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 32.55 | 37.9 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 27.45 | 36.84 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 28.24 | 32.88 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 16.08 | 21.93 |
Protein Annotations
| EnsemblPlants:Solyc03g007740.2.1 | EnsemblPlantsGene:Solyc03g007740.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| ncoils:Coil | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00001AB8AC | UniProt:K4BEJ6 | MapMan:13.7.2.1 | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4BEJ6]
Coordinates
chr3:+:2271270..2273817
Molecular Weight (calculated)
28676.2 Da
IEP (calculated)
7.254
GRAVY (calculated)
0.211
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHAGEHEP VVESVMEKIN EKLHDHNSSS SDSEDEKEKI SSVDAVKAKI YRLFGRERPV HKVLGGGKPA DIFLWRDKKI TAGVLGFATS LWVLFELLQY
101: HLLTLVCHIL ILALAVLFLW SNASTFINKS PPQIPDVILP EDIVLGVAAA LRIEINRALE VFRDIASGKE LKKFLGVIAG LWVLSILGNC WNFLTLFYIC
201: FVLLHTVPVL YEKFEDQVDA FAEKAEAEIK KQYAVFNVKV LSKIPRGPLK DKKLL
101: HLLTLVCHIL ILALAVLFLW SNASTFINKS PPQIPDVILP EDIVLGVAAA LRIEINRALE VFRDIASGKE LKKFLGVIAG LWVLSILGNC WNFLTLFYIC
201: FVLLHTVPVL YEKFEDQVDA FAEKAEAEIK KQYAVFNVKV LSKIPRGPLK DKKLL
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.