Factsheet for Solyc06g082740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	64.63	60.66
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	50.22	46.37
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	49.34	45.56
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	48.91	45.34
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	48.91	44.62
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	48.03	44.0
Solyc03g007740.2.1	Tomato	nucleus	48.91	43.92
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	47.16	43.55
Os05t0312500-01	Rice	plasma membrane	47.6	43.43
Solyc01g095200.2.1	Tomato	plastid	49.78	43.35
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	46.72	43.15
Solyc06g036430.2.1	Tomato	cytosol, nucleus, plasma membrane	47.6	43.08
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	47.16	42.86
Solyc08g081730.2.1	Tomato	endoplasmic reticulum, plastid	49.78	42.22
Solyc10g011870.2.1	Tomato	cytosol, nucleus, plasma membrane	48.03	41.83
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	34.5	39.9
TraesCS1D01G083100.2	Wheat	mitochondrion	47.6	37.72
Solyc05g008890.2.1	Tomato	plasma membrane	34.06	35.29
Solyc12g006290.1.1	Tomato	nucleus	35.81	35.19
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	31.44	34.45
Solyc03g119190.2.1	Tomato	plasma membrane	32.31	33.79
KRH30696	Soybean	plasma membrane	35.37	32.93
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	25.76	31.05
Solyc07g044880.2.1	Tomato	mitochondrion	19.21	30.99
Solyc01g107620.2.1	Tomato	plasma membrane	28.82	30.14
Solyc02g090370.2.1	Tomato	plasma membrane	14.41	17.65

Protein Annotations

EnsemblPlants:Solyc06g082740.2.1	EnsemblPlantsGene:Solyc06g082740.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	InterPro:Reticulon
PANTHER:PTHR10994	PANTHER:PTHR10994:SF70	PFAM:PF02453	PFscan:PS50845	SEG:seg	TMHMM:TMhelix
UniParc:UPI00027659D2	UniProt:K4CAC9	MapMan:13.7.2.1	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4CAC9]

Coordinates

chr6:+:48449001..48451078

Molecular Weight (calculated)

26415.6 Da

IEP (calculated)

9.557

GRAVY (calculated)

0.140

Length

229 amino acids

Sequence
(BLAST)

001: MENKQKALNH NDFSSSSTTD DSRRPIDKKK CHLFNRHKPV HSILGGGKLA DILLWRKKIS GGLLAGATVI WFLFECIGYH LLTLICHSLI VSLAILFFWS
101: NLSLFINKSF VELPKIELPE ELWMRLVLLL RNQCTSAVGI FREVASGNDL KKFLYAIFSL WIVSIVGRWF SFLITVMLLT VPFLYEKYGD QVDTYGEMAI
201: KELRKQYSQV DEKVLQKLPI PFIKDSKQE

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.