Factsheet for TraesCS1A01G081500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	96.81	97.2
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	92.03	93.52
TraesCS1D01G083100.2	Wheat	mitochondrion	98.01	85.12
Os05t0312500-01	Rice	plasma membrane	82.87	82.87
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	82.07	81.75
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	80.48	81.45
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	62.95	63.71
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	59.76	60.48
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	58.57	59.27
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	44.62	56.57
TraesCS3A01G278800.1	Wheat	golgi	52.99	53.63
Solyc06g082740.2.1	Tomato	nucleus	44.62	48.91
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	47.01	48.36
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	46.22	47.54
TraesCS3A01G151200.1	Wheat	cytosol, peroxisome, plasma membrane	53.39	41.61
TraesCS1A01G346800.3	Wheat	plasma membrane	39.84	39.68
TraesCS7A01G341800.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	39.04	37.69
TraesCS1A01G373800.1	Wheat	cytosol, peroxisome, plasma membrane	34.66	37.18
TraesCS5A01G418200.1	Wheat	cytosol, peroxisome, plasma membrane	38.25	36.78
TraesCS3A01G261500.1	Wheat	plasma membrane	31.47	36.07
TraesCS2A01G254300.1	Wheat	cytosol, peroxisome, vacuole	34.26	34.82
TraesCS2A01G544000.1	Wheat	plasma membrane	25.1	31.66
KRH30696	Soybean	plasma membrane	30.68	31.3
TraesCS4A01G135900.1	Wheat	peroxisome	24.3	26.87
TraesCS3A01G051200.1	Wheat	cytosol	30.28	23.03

Protein Annotations

EnsemblPlants:TraesCS1A01G081500.1	EnsemblPlantsGene:TraesCS1A01G081500	InterPro:IPR003388	InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF94
PFAM:PF02453	PFscan:PS50845	SEG:seg	TMHMM:TMhelix	MapMan:13.7.2.1	:

Description

No Description!

Coordinates

chr1A:-:64713409..64715013

Molecular Weight (calculated)

28362.7 Da

IEP (calculated)

8.110

GRAVY (calculated)

-0.012

Length

251 amino acids

Sequence
(BLAST)

001: MMSESEEHGS LLEKIGDKIG DKIHEFKKDS SSSSSDDDDD KKSHKSKKKH LFGRKHPLHN VLGGGKAADL VMWRDKQKSG SILGGVTVIW LLFEGIGYHL
101: LTFLCHLLII FLTVSFVWSN AASFINRSPP KFPEVILSET QCMIIAHVLR KEINEAFITL QSVASGKDLK TYLKSIGILW FISIIGGCFS FLTLSYTIFL
201: MAYTLPMLYE KYEDEVDVVG EKALIELKKQ YAVFDEKVLS KIPMLADKKQ H

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.