Factsheet for GSMUA_Achr5P07570_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	76.61	76.61
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	71.37	71.37
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	55.24	69.19
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	60.08	60.08
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	59.68	59.92
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	59.27	58.8
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	59.27	58.57
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	58.87	57.94
Os05t0312500-01	Rice	plasma membrane	58.06	57.37
GSMUA_Achr8P27830_001	Banana	cytosol, peroxisome, plasma membrane	53.63	52.99
GSMUA_Achr3P31920_001	Banana	cytosol	46.37	52.51
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	54.03	51.94
TraesCS1D01G083100.2	Wheat	mitochondrion	59.68	51.21
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, plasma membrane	52.02	51.19
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	50.0	50.82
GSMUA_Achr6P31860_001	Banana	cytosol, nucleus, plasma membrane	51.61	50.79
GSMUA_Achr9P05440_001	Banana	nucleus, peroxisome, plasma membrane	51.21	50.6
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	49.6	50.41
Solyc06g082740.2.1	Tomato	nucleus	45.56	49.34
GSMUA_Achr5P06850_001	Banana	cytosol, nucleus, plasma membrane	48.79	48.4
GSMUA_Achr4P08400_001	Banana	cytosol	48.39	47.43
GSMUA_Achr2P07230_001	Banana	golgi, plasma membrane, vacuole	34.68	40.95
GSMUA_Achr6P04560_001	Banana	cytosol, peroxisome, plasma membrane	37.5	37.5
GSMUA_Achr8P31770_001	Banana	peroxisome	33.06	36.77
KRH30696	Soybean	plasma membrane	35.89	36.18
GSMUA_Achr9P10200_001	Banana	cytosol, peroxisome, plasma membrane	33.87	34.71
GSMUA_Achr3P15760_001	Banana	cytosol	20.97	34.67
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	31.85	34.35
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	29.84	33.18
GSMUA_Achr10P...	Banana	plasma membrane	29.03	31.3
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	28.63	28.74
GSMUA_Achr6P33560_001	Banana	plasma membrane	28.23	26.52
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	29.84	26.24
GSMUA_AchrUn_...	Banana	golgi	32.66	23.01

Protein Annotations

EnsemblPlants:GSMUA_Achr5P07570_001	EnsemblPlants:GSMUA_Achr5T07570_001	EnsemblPlantsGene:GSMUA_Achr5G07570_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003388	InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF70	PFAM:PF02453	PFscan:PS50845
SEG:seg	TMHMM:TMhelix	UniParc:UPI000296093C	UniProt:M0SWI6	MapMan:13.7.2.1	:

Description

Reticulon-like protein B1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07570_001]

Coordinates

chr5:-:5434513..5437151

Molecular Weight (calculated)

27815.1 Da

IEP (calculated)

9.041

GRAVY (calculated)

0.226

Length

248 amino acids

Sequence
(BLAST)

001: MMSEIGEQAS MTDRIHEKIH EYKGSSSSSD SDNEKPSANV STKKRLFGRK EPVHAVLGGG KSADIILWRN KQQSGSILAG VTVIWLLFEW IGYHLLTFIC
101: HSLILLLAVS YLWSNAALFV NRSPPKFPEL FVPEDVFLSM ALILRNKINE VFAIFCCVAT GNDLRKFLKV IGGLWILSVV GGWFSFLTLF YIVVLILYTA
201: PVLYEKYEDN VDTAAEKAMV QIDKQYAVLN AKVLQKIPGG RLSSIKQH

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.