Factsheet for GSMUA_Achr10P12880_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	81.31	64.92
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	70.2	56.05
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	69.19	55.24
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	59.6	47.58
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	59.09	46.43
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	57.58	46.15
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	57.58	45.6
Os05t0312500-01	Rice	plasma membrane	57.58	45.42
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	56.57	44.62
GSMUA_Achr8P27830_001	Banana	cytosol, peroxisome, plasma membrane	52.53	41.43
GSMUA_Achr3P31920_001	Banana	cytosol	44.95	40.64
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	52.53	40.31
GSMUA_Achr9P05440_001	Banana	nucleus, peroxisome, plasma membrane	50.51	39.84
TraesCS1D01G083100.2	Wheat	mitochondrion	57.58	39.45
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	47.98	38.93
GSMUA_Achr6P31860_001	Banana	cytosol, nucleus, plasma membrane	49.49	38.89
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	47.47	38.52
GSMUA_Achr4P08400_001	Banana	cytosol	47.98	37.55
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, plasma membrane	47.47	37.3
Solyc06g082740.2.1	Tomato	nucleus	39.9	34.5
GSMUA_Achr5P06850_001	Banana	cytosol, nucleus, plasma membrane	43.43	34.4
GSMUA_Achr3P15760_001	Banana	cytosol	25.76	34.0
KRH30696	Soybean	plasma membrane	40.4	32.52
GSMUA_Achr6P04560_001	Banana	cytosol, peroxisome, plasma membrane	38.89	31.05
GSMUA_Achr8P31770_001	Banana	peroxisome	33.84	30.04
GSMUA_Achr2P07230_001	Banana	golgi, plasma membrane, vacuole	31.31	29.52
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	31.82	27.39
GSMUA_Achr9P10200_001	Banana	cytosol, peroxisome, plasma membrane	32.83	26.86
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	29.29	26.01
GSMUA_Achr10P...	Banana	plasma membrane	28.79	24.78
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	32.83	23.05
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	27.27	21.86
GSMUA_Achr6P33560_001	Banana	plasma membrane	27.78	20.83
GSMUA_AchrUn_...	Banana	golgi	35.86	20.17

Protein Annotations

EnsemblPlants:GSMUA_Achr10P12880_001	EnsemblPlants:GSMUA_Achr10T12880_001	EnsemblPlantsGene:GSMUA_Achr10G12880_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF70	PFAM:PF02453	PFscan:PS50845	TMHMM:TMhelix
UniParc:UPI000295F32E	UniProt:M0RHR4	MapMan:13.7.2.1	:	:	:

Description

Seed maturation protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G12880_001]

Coordinates

chr10:-:21749533..21752612

Molecular Weight (calculated)

22693.9 Da

IEP (calculated)

8.225

GRAVY (calculated)

0.396

Length

198 amino acids

Sequence
(BLAST)

001: MSEVDGSERI NEKIHEYRGS SSDSDDEKPL FHNSRKKWLF GRKESVHALL GGGKSADIIL WRNMQLSGSI FAGVTVIWLL FVWMGYHLLT FICHFLILLL
101: AISFLWINGA SFVNRSPPKF PEVFLPEDLF LSIAQSVRYE INEALATFYY VACGKDLKKF LMVIAGLWVL SVIGSLFSFL TLIYISKFHF QLLLPLYN

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.