CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	32.52	40.4
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	37.8	37.5
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	36.59	36.29
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	36.18	35.89
Solyc06g082740.2.1	Tomato	nucleus	32.93	35.37
KRG99174	Soybean	endoplasmic reticulum, plasma membrane	12.2	34.48
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	33.74	34.02
KRH06560	Soybean	endoplasmic reticulum	35.37	33.98
KRH59988	Soybean	mitochondrion	34.96	33.86
KRH41254	Soybean	cytosol, nucleus, plasma membrane	34.96	33.86
KRH35223	Soybean	cytosol, nucleus, plasma membrane	34.15	33.6
KRH00872	Soybean	endoplasmic reticulum	34.96	33.2
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	32.93	33.2
KRH40357	Soybean	endoplasmic reticulum	33.74	32.3
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	32.11	31.35
Os05t0312500-01	Rice	plasma membrane	31.71	31.08
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	31.3	31.05
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.3	30.8
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	30.89	30.77
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.3	30.68
KRH14529	Soybean	cytosol, peroxisome, plasma membrane	30.08	30.2
KRH75801	Soybean	plasma membrane	25.61	30.14
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	25.61	30.14
KRH45979	Soybean	cytosol, nucleus, plasma membrane	29.67	30.04
KRH73588	Soybean	plasma membrane	29.67	29.8
KRG99024	Soybean	plasma membrane	29.27	27.27
KRH48008	Soybean	cytosol, peroxisome, plasma membrane	34.55	27.07
TraesCS1D01G083100.2	Wheat	mitochondrion	31.3	26.64
KRH48561	Soybean	plasma membrane	23.17	25.68
KRH39144	Soybean	plasma membrane	23.17	25.68
KRG91024	Soybean	plasma membrane	20.73	25.0
KRH35899	Soybean	plasma membrane	21.14	24.53
KRG91601	Soybean	mitochondrion	33.74	24.41
KRH35738	Soybean	endoplasmic reticulum	19.51	23.53
KRH18469	Soybean	plasma membrane	17.48	21.72
KRG93546	Soybean	plasma membrane	17.07	21.11
KRH28521	Soybean	endoplasmic reticulum	17.89	20.75
KRH76938	Soybean	endoplasmic reticulum, plasma membrane	10.98	16.77

Protein Annotations

EMBL:ACUP02007060	EnsemblPlants:KRH30696	EnsemblPlantsGene:GLYMA_11G201400	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003388	InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF70	PFAM:PF02453	PFscan:PS50845
ProteinID:KRH30696	ProteinID:KRH30696.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029574EA	UniProt:K7LR81
MapMan:13.7.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:28181947..28184549

Molecular Weight (calculated)

27880.4 Da

IEP (calculated)

5.331

GRAVY (calculated)

0.532

Length

246 amino acids

Sequence
(BLAST)

001: MTRPTEFMDV ADSDFLGNKE FDEEDSEFET DFEKYFVYST AKNRFFGRKR PLRVILGSGL IADIILWRNR KISASVLVGV TFIWLFFKRM DCTLISFICD
101: SLILLLAMLF LWSHLTSFID TSPPPELSAF ILPKGLLVST AISVTRILNH LLITFGIVAS GQDLKKFLLV TVTLGAVSVL DCWITAATLI YIVSVILLIV
201: PAIYEKHGDI IDILGEKALF ELNNLYADLM KKFFGKSQHL QECFLD

Best Arabidopsis Sequence Match ( AT4G23630.1 )
(BLAST)

001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD

Arabidopsis Description

RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.