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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
 endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG91024 Soybean plasma membrane 92.16 92.16
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 64.71 63.77
PGSC0003DMT400066222 Potato plasma membrane 60.78 60.78
Solyc01g107620.2.1 Tomato plasma membrane 60.78 56.62
Os04t0670000-01 Rice plasma membrane 50.0 51.26
Zm00001d001901_P002 Maize plasma membrane 49.51 51.01
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 55.39 50.67
EES11624 Sorghum plasma membrane 49.02 50.51
AT2G15280.1 Thale cress plasma membrane 49.02 49.75
TraesCS2A01G544000.1 Wheat plasma membrane 48.53 49.75
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 47.55 48.99
Bra040612.1-P Field mustard plasma membrane 43.63 48.63
CDX71213 Canola plasma membrane 47.06 47.29
TraesCS2D01G545200.1 Wheat plasma membrane 45.59 46.97
TraesCS2B01G574200.2 Wheat plasma membrane 45.59 46.73
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 46.08 46.31
GSMUA_Achr4P20190_001 Banana cytosol, plastid 55.88 40.43
KRH66004 Soybean endoplasmic reticulum, golgi, plasma membrane 40.2 39.23
KRH75801 Soybean plasma membrane 39.71 38.76
KRG93546 Soybean plasma membrane 37.75 38.69
KRH18469 Soybean plasma membrane 36.27 37.37
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 32.84 36.02
KRH45979 Soybean cytosol, nucleus, plasma membrane 38.24 32.1
KRH59988 Soybean mitochondrion 39.71 31.89
KRH14529 Soybean cytosol, peroxisome, plasma membrane 37.75 31.43
KRH41254 Soybean cytosol, nucleus, plasma membrane 38.73 31.1
KRH73588 Soybean plasma membrane 36.27 30.2
KRH35223 Soybean cytosol, nucleus, plasma membrane 36.76 30.0
KRG99174 Soybean endoplasmic reticulum, plasma membrane 12.75 29.89
KRH35899 Soybean plasma membrane 30.88 29.72
KRH06560 Soybean endoplasmic reticulum 37.25 29.69
KRG99024 Soybean plasma membrane 38.24 29.55
KRH00872 Soybean endoplasmic reticulum 36.76 28.96
KRH40357 Soybean endoplasmic reticulum 36.27 28.79
KRH76938 Soybean endoplasmic reticulum, plasma membrane 22.55 28.57
KRH39144 Soybean plasma membrane 29.9 27.48
KRH28521 Soybean endoplasmic reticulum 28.43 27.36
KRH48561 Soybean plasma membrane 29.41 27.03
KRH48008 Soybean cytosol, peroxisome, plasma membrane 39.22 25.48
KRG91601 Soybean mitochondrion 35.78 21.47
KRH30696 Soybean plasma membrane 23.53 19.51
Protein Annotations
EntrezGene:100527732MapMan:13.7.2.1EMBL:ACUP02006701EMBL:BT092602UniProt:C6T590EnsemblPlantsGene:GLYMA_10G262100
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021InterPro:IPR003388EnsemblPlants:KRH35738ProteinID:KRH35738ProteinID:KRH35738.1
PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF125InterPro:ReticulonTMHMM:TMhelix
UniParc:UPI0001B15CC3SEG:seg::::
Description
hypothetical protein
Coordinates
chr10:-:48688719..48690905
Molecular Weight (calculated)
23058.7 Da
IEP (calculated)
8.793
GRAVY (calculated)
0.580
Length
204 amino acids
Sequence
(BLAST)
001: MGDSKHISVH RLLGEGLIAD VVLWKNWRGA VAVLVSATAL WYLFERAGYN FLSFVANVVL LLVVILFFWA KAANLLNRPL PPLPDLEISE ETIARVADAL
101: QIWMNRALSV AHDIAIERNL LLCLQVVGVL WVISYIGSLF NFLTLIYFGV LLCLSLPVLY DKYQDRVDDR LCVIHGIIQT QYTKVHSTVL SKIPKLSNKE
201: KKVQ
Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.