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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH00872 Soybean endoplasmic reticulum 94.55 93.82
KRG99174 Soybean endoplasmic reticulum, plasma membrane 29.57 87.36
KRH06560 Soybean endoplasmic reticulum 77.04 77.34
KRH59988 Soybean mitochondrion 69.65 70.47
KRH41254 Soybean cytosol, nucleus, plasma membrane 69.26 70.08
Solyc01g095200.2.1 Tomato plastid 71.21 69.58
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 68.87 69.41
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 71.21 69.06
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 69.26 67.68
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 65.76 67.33
CDY42012 Canola cytosol, peroxisome, plasma membrane 65.76 67.33
CDX79993 Canola cytosol, peroxisome, plasma membrane 65.76 67.33
Os01t0226300-01 Rice plasma membrane 45.91 66.29
CDY52012 Canola cytosol, peroxisome, plasma membrane 65.37 66.14
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 63.81 65.34
Os01t0736900-01 Rice plasma membrane 64.2 65.22
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 64.59 65.1
Zm00001d043551_P003 Maize plasma membrane 64.98 64.98
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 64.98 64.73
CDY53913 Canola cytosol, peroxisome, plasma membrane 63.81 64.57
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 63.81 64.57
KXG33320 Sorghum cytosol, nucleus, plasma membrane 64.59 64.34
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 61.87 64.11
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 61.87 63.86
Os05t0526400-01 Rice plasma membrane 62.26 63.74
Zm00001d012776_P001 Maize extracellular 62.26 63.24
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 62.26 63.24
EES19841 Sorghum cytosol, nucleus, plasma membrane 62.65 63.14
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 61.48 62.95
KRH48008 Soybean cytosol, peroxisome, plasma membrane 76.65 62.74
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 60.31 62.0
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 60.7 61.9
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 60.7 61.9
Zm00001d038768_P001 Maize extracellular, mitochondrion 61.09 61.81
TraesCS3A01G278800.1 Wheat golgi 59.53 61.69
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 60.7 61.66
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 59.14 61.29
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 60.7 61.18
GSMUA_Achr4P08400_001 Banana cytosol 59.14 60.08
GSMUA_Achr3P31920_001 Banana cytosol 50.97 59.82
KRH35223 Soybean cytosol, nucleus, plasma membrane 56.42 58.0
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 62.26 57.35
KXG31516 Sorghum cytosol, nucleus, plasma membrane 62.65 56.69
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 62.26 55.94
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 62.26 55.94
Zm00001d020229_P001 Maize plasma membrane 32.3 54.61
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 48.25 53.91
Zm00001d020729_P001 Maize plasma membrane 19.84 53.68
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 63.03 52.94
TraesCS1A01G346800.3 Wheat plasma membrane 50.97 51.98
HORVU3Hr1G030760.2 Barley mitochondrion 62.65 51.27
AT4G01230.2 Thale cress cytosol 48.64 51.23
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 50.97 50.19
Zm00001d016041_P001 Maize extracellular 44.75 50.0
VIT_02s0025g00590.t01 Wine grape mitochondrion 11.67 50.0
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 62.65 50.0
CDY07184 Canola cytosol, peroxisome, plasma membrane 46.69 49.38
Bra037369.1-P Field mustard cytosol 46.69 49.38
CDY48510 Canola cytosol 46.69 49.38
EER89811 Sorghum peroxisome 49.03 49.22
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 44.36 49.14
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 48.64 47.89
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 48.25 47.69
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 48.25 47.69
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.86 47.31
Os06t0503400-01 Rice plasma membrane 47.47 46.04
KRH45979 Soybean cytosol, nucleus, plasma membrane 41.63 44.03
HORVU7Hr1G081290.4 Barley plastid 38.52 42.86
KRH14529 Soybean cytosol, peroxisome, plasma membrane 40.86 42.86
KRG91601 Soybean mitochondrion 54.86 41.47
GSMUA_Achr3P15760_001 Banana cytosol 24.12 41.33
KRH73588 Soybean plasma membrane 39.3 41.22
HORVU7Hr1G075700.2 Barley mitochondrion 47.86 41.0
KRH48561 Soybean plasma membrane 35.41 40.99
KRH39144 Soybean plasma membrane 35.41 40.99
KRG99024 Soybean plasma membrane 40.86 39.77
KRH35899 Soybean plasma membrane 32.68 39.62
KRG91024 Soybean plasma membrane 30.35 38.24
KRH35738 Soybean endoplasmic reticulum 28.79 36.27
KRH66004 Soybean endoplasmic reticulum, golgi, plasma membrane 29.18 35.89
KRH75801 Soybean plasma membrane 28.02 34.45
KRH30696 Soybean plasma membrane 32.3 33.74
CDX89122 Canola extracellular, mitochondrion 19.84 33.33
KRH18469 Soybean plasma membrane 24.9 32.32
KRH28521 Soybean endoplasmic reticulum 26.46 32.08
KRG93546 Soybean plasma membrane 24.51 31.66
KRH76938 Soybean endoplasmic reticulum, plasma membrane 17.9 28.57
Protein Annotations
EntrezGene:100793862MapMan:13.7.2.1EMBL:ACUP02006036EMBL:BT096927UniProt:C6TH16EnsemblPlantsGene:GLYMA_09G253600
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021InterPro:IPR003388EnsemblPlants:KRH40357ProteinID:KRH40357ProteinID:KRH40357.1
PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:ReticulonTMHMM:TMhelix
UniParc:UPI0001B16DF9SEG:seg::::
Description
hypothetical protein
Coordinates
chr9:+:47333561..47336008
Molecular Weight (calculated)
28594.9 Da
IEP (calculated)
7.785
GRAVY (calculated)
0.202
Length
257 amino acids
Sequence
(BLAST)
001: MAEEPESTVT TGAPDESLLD KITEKLHGHD SSSSSSSDSD SEKTVTSSVK DRVFRLFGRE RPVHSVFGAG KPADVLLWRN KKISAGVLGG ATAVWVLFEL
101: LEYHLLTLVC HILILLLAVL FLWSNAHTFI HKSPPRIPEV HLPEEPFQQV ASALRIEINR GFAILHSIGS GRDLKKFLVI IAGVWILSIV GNWCNFLTLF
201: YITFVLSHTV PVLYEKYEDK IDPLAEKAVI EIKKQYVVFD AKVLSKIPLG PLKAKLS
Best Arabidopsis Sequence Match ( AT1G64090.1 )
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.