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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 100.0 100.0
CDY52012 Canola cytosol, peroxisome, plasma membrane 98.03 98.03
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 91.73 92.09
CDX79993 Canola cytosol, peroxisome, plasma membrane 82.28 83.27
CDY42012 Canola cytosol, peroxisome, plasma membrane 81.5 82.47
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 64.96 64.71
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 65.35 64.34
KRH40357 Soybean endoplasmic reticulum 64.57 63.81
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 65.75 63.5
KRH00872 Soybean endoplasmic reticulum 64.57 63.32
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 62.2 62.95
KRH06560 Soybean endoplasmic reticulum 62.99 62.5
Solyc01g095200.2.1 Tomato plastid 64.17 61.98
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 60.63 61.6
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 64.17 61.51
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 60.63 61.35
CDY38194 Canola cytosol, nucleus, plasma membrane 59.84 60.8
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 59.84 60.56
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 59.84 60.56
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 59.84 60.32
GSMUA_Achr3P31920_001 Banana cytosol 51.97 60.27
KRG99174 Soybean endoplasmic reticulum, plasma membrane 20.47 59.77
Os01t0736900-01 Rice plasma membrane 59.45 59.68
TraesCS3A01G278800.1 Wheat golgi 58.27 59.68
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 58.27 59.68
Os01t0226300-01 Rice plasma membrane 41.73 59.55
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 59.06 59.29
Zm00001d012776_P001 Maize extracellular 59.06 59.29
Zm00001d043551_P003 Maize plasma membrane 59.84 59.14
Os05t0526400-01 Rice plasma membrane 58.27 58.96
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 58.27 58.73
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 57.09 58.47
EES19841 Sorghum cytosol, nucleus, plasma membrane 58.66 58.43
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 57.09 58.23
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 58.27 58.04
CDY57657 Canola cytosol, nucleus, plasma membrane 62.6 57.82
KXG33320 Sorghum cytosol, nucleus, plasma membrane 58.66 57.75
GSMUA_Achr4P08400_001 Banana cytosol 57.48 57.71
CDY24806 Canola cytosol 61.81 57.3
CDY44123 Canola cytosol, nucleus, plasma membrane 62.2 57.25
Zm00001d038768_P001 Maize extracellular, mitochondrion 56.69 56.69
CDY10954 Canola cytosol 60.24 56.67
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 55.12 56.0
CDY41666 Canola cytosol 60.63 55.8
CDX90792 Canola cytosol, peroxisome, plasma membrane 58.27 55.43
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 60.24 54.84
KXG31516 Sorghum cytosol, nucleus, plasma membrane 59.84 53.52
KRH48008 Soybean cytosol, peroxisome, plasma membrane 64.96 52.55
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 47.24 52.17
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 58.66 52.1
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 58.27 51.75
Zm00001d016041_P001 Maize extracellular 46.85 51.74
CDY07184 Canola cytosol, peroxisome, plasma membrane 49.21 51.44
CDY48510 Canola cytosol 49.21 51.44
Zm00001d020229_P001 Maize plasma membrane 30.32 50.66
Zm00001d020729_P001 Maize plasma membrane 18.9 50.53
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 45.67 50.0
VIT_02s0025g00590.t01 Wine grape mitochondrion 11.81 50.0
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 59.84 49.67
CDY13240 Canola cytosol, peroxisome, plasma membrane 31.1 49.07
TraesCS1A01G346800.3 Wheat plasma membrane 48.03 48.41
CDY05135 Canola mitochondrion 57.87 46.96
HORVU3Hr1G030760.2 Barley mitochondrion 57.87 46.82
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 47.24 45.98
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 58.27 45.96
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 46.85 45.59
CDY62522 Canola cytosol 14.17 45.0
EER89811 Sorghum peroxisome 45.28 44.92
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 45.28 44.23
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.88 43.85
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.88 43.85
Os06t0503400-01 Rice plasma membrane 45.67 43.77
GSMUA_Achr3P15760_001 Banana cytosol 24.41 41.33
CDX89122 Canola extracellular, mitochondrion 24.8 41.18
CDY00916 Canola plasma membrane 38.19 40.59
CDY08616 Canola plasma membrane 37.8 40.17
HORVU7Hr1G081290.4 Barley plastid 35.43 38.96
HORVU7Hr1G075700.2 Barley mitochondrion 44.88 38.0
CDX81500 Canola plasma membrane 31.1 37.98
CDY66516 Canola endoplasmic reticulum, extracellular 27.56 37.63
CDX96038 Canola plasma membrane 31.1 37.44
CDY67571 Canola plasma membrane 32.28 36.61
CDY01898 Canola plasma membrane 30.32 36.32
CDX75962 Canola plasma membrane 31.89 36.16
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 31.89 36.16
CDX86802 Canola cytosol, nucleus, peroxisome 34.65 35.92
CDX67589 Canola golgi, plasma membrane, vacuole 27.56 34.48
CDY51584 Canola plasma membrane 26.77 33.5
CDX78209 Canola golgi, plasma membrane, vacuole 26.77 33.17
CDY46172 Canola plastid 26.38 33.17
CDX99221 Canola plasma membrane 26.38 33.0
CDX73507 Canola cytosol, golgi, plasma membrane 25.98 32.2
CDX82294 Canola plastid 24.8 32.14
CDY22970 Canola plasma membrane 24.41 31.63
CDY22971 Canola plasma membrane 24.41 31.63
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 29.13 30.96
CDY36282 Canola plasma membrane 26.77 30.49
CDY08567 Canola cytosol 28.74 30.29
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 24.02 30.05
CDX71213 Canola plasma membrane 23.62 29.56
CDY46067 Canola plasma membrane 22.05 26.92
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 25.98 26.61
CDX76854 Canola plasma membrane 21.65 26.57
CDY12701 Canola plasma membrane 31.5 26.49
CDY56712 Canola mitochondrion 37.01 26.48
Protein Annotations
MapMan:13.7.2.1GO:A0A078IY20UniProt:A0A078IY20EnsemblPlants:CDY53913ProteinID:CDY53913ProteinID:CDY53913.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00011682001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF95InterPro:ReticulonTMHMM:TMhelixUniParc:UPI00018C7001SEG:seg
Description
BnaA07g38210DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY20]
Coordinates
chrLK033249:-:47945..49602
Molecular Weight (calculated)
28898.6 Da
IEP (calculated)
8.274
GRAVY (calculated)
0.135
Length
254 amino acids
Sequence
(BLAST)
001: MAEESEKPVH TEESLMEKIA EKIHDHHDSS SSSDSDHEKP ESQSALKAKI YRLFGREKPV HKVLGGGLPA DVFLWRDKKL SAAVLGVATA IWVLFELVEY
101: HFLSLVCHIL IFSLAAMFLW SNAHAFMKKS PPKIPEIQVK EEHFLLIASA LRNELNQAFV ILRSIALGRD LKKFLMVVVG LWIISVVGNW FNFLTLVYIC
201: FVVLHTVPML YEKHEDKVDP VAEKTLKELK KHYMVFDEKV LSKIPLASLK AKLG
Best Arabidopsis Sequence Match ( AT3G61560.1 )
(BLAST)
001: MAEELEKSMH KEESLMEKIA DKIHDHDSSS SSDSEHEKPE SPSALKAKIY RLFGREKPVH KVLGGGLPAD VFLWRDKKLS ASVLGVATAI WVLFELVEYH
101: FLSLVCHILI FALAALFLLS NAHAFMNKTP PKIPEIHIKE EHFLMIVSAL RNELNQAFVI LRSIALGRDL KKFLMVVFGL WIISVVGNWF NFLTLVYICF
201: VVLHTVPMLY EKHEDKVDPV AEKTLKELKK HYMVFDEKVL SKLPVASLKA KLG
Arabidopsis Description
RTNLB6Reticulon-like protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN4]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.