Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000739.1-P | Field mustard | cytosol | 99.63 | 99.63 |
| AT4G11220.1 | Thale cress | nucleus | 92.13 | 90.77 |
| CDY24806 | Canola | cytosol | 85.39 | 83.21 |
| CDY10954 | Canola | cytosol | 83.15 | 82.22 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 49.44 | 81.99 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 84.64 | 81.88 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 84.27 | 81.82 |
| CDY05135 | Canola | mitochondrion | 95.51 | 81.47 |
| CDY41666 | Canola | cytosol | 83.15 | 80.43 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 66.67 | 70.08 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 65.92 | 69.84 |
| KRH59988 | Soybean | mitochondrion | 66.29 | 69.69 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.04 | 68.13 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.04 | 68.13 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 63.67 | 68.0 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 62.55 | 66.8 |
| Os01t0226300-01 | Rice | plasma membrane | 43.82 | 65.73 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 65.92 | 65.19 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 65.92 | 65.19 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 62.17 | 65.1 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 61.05 | 64.94 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 59.55 | 63.86 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 59.93 | 63.74 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 59.55 | 63.35 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 59.55 | 63.35 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 58.8 | 63.31 |
| Zm00001d012776_P001 | Maize | extracellular | 59.93 | 63.24 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 61.05 | 63.18 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 59.93 | 62.75 |
| Zm00001d043551_P003 | Maize | plasma membrane | 60.3 | 62.65 |
| Os05t0526400-01 | Rice | plasma membrane | 58.8 | 62.55 |
| Os01t0736900-01 | Rice | plasma membrane | 59.18 | 62.45 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 57.68 | 62.1 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 58.43 | 61.42 |
| TraesCS3A01G278800.1 | Wheat | golgi | 56.93 | 61.29 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 58.05 | 61.26 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 58.05 | 60.78 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 56.93 | 60.32 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 56.93 | 59.84 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 57.68 | 59.69 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 48.31 | 58.9 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 55.06 | 58.33 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 55.43 | 58.27 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 54.31 | 57.31 |
| CDY62522 | Canola | cytosol | 16.85 | 56.25 |
| Zm00001d016041_P001 | Maize | extracellular | 46.82 | 54.35 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 58.05 | 54.2 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 46.44 | 53.91 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 57.68 | 53.85 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 56.18 | 53.76 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 49.81 | 53.2 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 56.18 | 52.82 |
| Zm00001d020229_P001 | Maize | plasma membrane | 29.96 | 52.63 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 45.69 | 52.59 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 48.69 | 51.59 |
| Zm00001d020729_P001 | Maize | plasma membrane | 18.35 | 51.58 |
| EER89811 | Sorghum | peroxisome | 47.94 | 50.0 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 56.93 | 49.67 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 48.31 | 49.62 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 48.31 | 49.62 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.94 | 49.23 |
| Os06t0503400-01 | Rice | plasma membrane | 48.69 | 49.06 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 47.94 | 49.04 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 56.93 | 48.41 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 47.19 | 48.28 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 57.3 | 47.52 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 43.45 | 47.35 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 42.32 | 46.5 |
| CDY48510 | Canola | cytosol | 42.32 | 46.5 |
| HORVU7Hr1G081290.4 | Barley | plastid | 38.95 | 45.02 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 48.31 | 43.0 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 22.85 | 40.67 |
| CDX75962 | Canola | plasma membrane | 31.84 | 37.95 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 31.84 | 37.95 |
| CDY00916 | Canola | plasma membrane | 33.71 | 37.66 |
| CDY08616 | Canola | plasma membrane | 33.71 | 37.66 |
| CDY67571 | Canola | plasma membrane | 31.46 | 37.5 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 25.47 | 36.56 |
| CDY46172 | Canola | plastid | 26.59 | 35.15 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 23.6 | 35.0 |
| CDX99221 | Canola | plasma membrane | 26.59 | 34.98 |
| CDX96038 | Canola | plasma membrane | 27.34 | 34.6 |
| CDX81500 | Canola | plasma membrane | 26.22 | 33.65 |
| CDY01898 | Canola | plasma membrane | 26.59 | 33.49 |
| CDX82294 | Canola | plastid | 24.34 | 33.16 |
| CDY22971 | Canola | plasma membrane | 24.34 | 33.16 |
| CDY22970 | Canola | plasma membrane | 23.97 | 32.65 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 24.72 | 32.51 |
| CDY51584 | Canola | plasma membrane | 24.72 | 32.51 |
| CDX89122 | Canola | extracellular, mitochondrion | 18.35 | 32.03 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 23.22 | 30.24 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 23.22 | 30.24 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 26.97 | 30.13 |
| CDY36282 | Canola | plasma membrane | 24.34 | 29.15 |
| CDY08567 | Canola | cytosol | 26.22 | 29.05 |
| CDX71213 | Canola | plasma membrane | 21.72 | 28.57 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 21.72 | 28.57 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 24.34 | 26.21 |
| CDY56712 | Canola | mitochondrion | 33.33 | 25.07 |
| CDY12701 | Canola | plasma membrane | 26.97 | 23.84 |
| CDY46067 | Canola | plasma membrane | 17.98 | 23.08 |
| CDX76854 | Canola | plasma membrane | 17.6 | 22.71 |
Protein Annotations
| EnsemblPlants:CDX90792 | EnsemblPlantsGene:GSBRNA2T00151496001 | GO:A0A078DP79 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX90792 | ProteinID:CDX90792.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EEAD85 | MapMan:13.7.2.1 | : | : | : |
Description
BnaA03g24720D
Coordinates
chrLK031864:-:559649..561202
Molecular Weight (calculated)
29653.4 Da
IEP (calculated)
9.021
GRAVY (calculated)
-0.040
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEHKHEES LPNLDPAVEV VERGSLMDKI SEKIHHKGGS SSSSDDESEK KPSSPSSLKS KVYRLFGRER PVHKVLGGGK PADIFMWKNK KMSGGVLGGA
101: TVAWVLFELL EYHLLTLLCH VMIVALAVLF LWSNATMFIH KSPPKIPEVH IPEDPLLQLA SGLRIEINRG FSSLHEIASG RDLKKFLSAL FGLWILSILG
201: GCCSFLTLAY IALVLLFTVP LVYDKYEDKV DSYGEKAMAE LKKQYAVLDA KVLSKIPRGP LKDKKKD
101: TVAWVLFELL EYHLLTLLCH VMIVALAVLF LWSNATMFIH KSPPKIPEVH IPEDPLLQLA SGLRIEINRG FSSLHEIASG RDLKKFLSAL FGLWILSILG
201: GCCSFLTLAY IALVLLFTVP LVYDKYEDKV DSYGEKAMAE LKKQYAVLDA KVLSKIPRGP LKDKKKD
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.