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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_02s0025g00640.t01
VIT_05s0102g00730.t01
VIT_06s0004g04200.t01
VIT_06s0009g03520.t01
VIT_07s0005g01960.t01
VIT_07s0031g02730.t01
VIT_09s0002g02400.t01
VIT_13s0019g03400.t01
VIT_13s0019g04120.t01
VIT_14s0060g00830.t01
VIT_14s0066g01650.t01
VIT_14s0068g02030.t01
VIT_14s0083g00300.t01
VIT_15s0046g01760.t01
VIT_15s0048g02220.t01
VIT_16s0098g01230.t01
VIT_19s0015g00340.t01
VIT_19s0085g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 VIT_07s0005g01960.t01 AT1G09330.1 21798944
AT4G11220.1 VIT_14s0060g00830.t01 AT1G09330.1 21798944
AT4G11220.1 VIT_05s0102g00730.t01 AT3G59500.1 21798944
AT5G41600.1 VIT_09s0002g02400.t01 AT1G55190.1 21798944
AT5G41600.1 VIT_19s0085g00270.t01 AT1G77350.1 21798944
AT5G41600.1 VIT_06s0009g03520.t01 AT2G03120.1 21798944
AT5G41600.1 VIT_13s0019g03400.t01 AT2G39960.1 21798944
AT5G41600.1 VIT_15s0048g02220.t01 AT2G46890.1 21798944
AT5G41600.1 VIT_14s0083g00300.t01 AT3G02420.1 21798944
AT5G41600.1 VIT_13s0019g04120.t01 AT3G07950.1 21798944
AT5G41600.1 VIT_19s0015g00340.t01 AT3G13175.1 21798944
AT5G41600.1 VIT_14s0068g02030.t01 AT3G27080.1 21798944
AT5G41600.1 VIT_14s0066g01650.t01 AT3G28050.1 21798944
AT5G41600.1 VIT_06s0004g04200.t01 AT3G46060.1 21798944
AT5G41600.1 VIT_05s0102g00730.t01 AT3G59500.1 21798944
AT5G41600.1 VIT_02s0025g00640.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_07s0031g02730.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_15s0046g01760.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_16s0098g01230.t01 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH59988 Soybean mitochondrion 76.19 75.59
KRH41254 Soybean cytosol, nucleus, plasma membrane 76.19 75.59
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 75.0 74.12
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 72.22 72.51
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 71.03 71.31
CDY38194 Canola cytosol, nucleus, plasma membrane 70.63 71.2
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 70.24 70.8
Os01t0226300-01 Rice plasma membrane 50.0 70.79
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 70.24 70.52
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 69.84 70.4
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 69.44 69.72
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 69.05 69.32
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 69.84 68.48
Zm00001d043551_P003 Maize plasma membrane 69.44 68.09
Zm00001d012776_P001 Maize extracellular 68.25 67.98
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 67.86 67.86
Os01t0736900-01 Rice plasma membrane 67.86 67.59
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 69.05 67.44
KXG33320 Sorghum cytosol, nucleus, plasma membrane 69.05 67.44
Zm00001d038768_P001 Maize extracellular, mitochondrion 67.86 67.32
EES19841 Sorghum cytosol, nucleus, plasma membrane 67.86 67.06
Os05t0526400-01 Rice plasma membrane 66.67 66.93
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 65.48 66.27
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 65.08 66.13
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 70.63 65.93
CDX90792 Canola cytosol, peroxisome, plasma membrane 69.84 65.92
TraesCS3A01G278800.1 Wheat golgi 64.68 65.73
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 65.87 65.61
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 70.24 65.56
Bra000739.1-P Field mustard cytosol 69.44 65.54
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 64.29 65.32
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 65.08 65.08
Bra019285.1-P Field mustard cytosol 69.05 64.93
GSMUA_Achr3P31920_001 Banana cytosol 56.35 64.84
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 65.48 64.71
CDY10954 Canola cytosol 69.05 64.44
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 69.05 64.21
AT4G11220.1 Thale cress nucleus 68.65 63.84
CDY24806 Canola cytosol 69.05 63.5
AT4G23630.2 Thale cress nucleus 69.05 63.27
CDY57657 Canola cytosol, nucleus, plasma membrane 69.05 63.27
Bra010539.1-P Field mustard cytosol 67.46 63.2
GSMUA_Achr4P08400_001 Banana cytosol 63.1 62.85
Bra013717.1-P Field mustard nucleus 68.65 62.68
CDY44123 Canola cytosol, nucleus, plasma membrane 68.65 62.68
CDY41666 Canola cytosol 68.25 62.32
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 62.7 62.2
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 59.13 59.6
KXG31516 Sorghum cytosol, nucleus, plasma membrane 66.27 58.8
Zm00001d020229_P001 Maize plasma membrane 35.32 58.55
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 64.68 58.42
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 65.87 58.04
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 65.48 57.69
Zm00001d020729_P001 Maize plasma membrane 21.43 56.84
VIT_02s0025g00590.t01 Wine grape mitochondrion 13.49 56.67
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 51.19 56.09
CDY13240 Canola cytosol, peroxisome, plasma membrane 35.71 55.9
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 66.27 54.58
Zm00001d016041_P001 Maize extracellular 49.6 54.35
CDY05135 Canola mitochondrion 67.46 54.31
TraesCS1A01G346800.3 Wheat plasma membrane 53.57 53.57
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 48.41 52.59
HORVU3Hr1G030760.2 Barley mitochondrion 65.08 52.23
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 65.48 51.24
EER89811 Sorghum peroxisome 51.98 51.17
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 52.38 50.57
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 51.59 50.0
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 51.59 50.0
Os06t0503400-01 Rice plasma membrane 52.38 49.81
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 51.19 49.62
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 50.79 49.04
CDY62522 Canola cytosol 15.48 48.75
HORVU7Hr1G081290.4 Barley plastid 40.87 44.59
GSMUA_Achr3P15760_001 Banana cytosol 26.19 44.0
HORVU7Hr1G075700.2 Barley mitochondrion 51.59 43.33
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 33.33 40.58
Bra035242.1-P Field mustard cytosol 31.75 40.0
VIT_12s0028g01090.t01 Wine grape cytosol, peroxisome, plasma membrane 39.29 39.92
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 27.38 38.33
CDX86802 Canola cytosol, nucleus, peroxisome 36.9 37.96
VIT_17s0000g03260.t01 Wine grape plasma membrane 31.35 37.26
VIT_08s0007g01720.t01 Wine grape plasma membrane 30.56 36.84
VIT_00s0253g00030.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 24.6 28.97
VIT_01s0011g04030.t01 Wine grape cytosol 34.92 23.53
VIT_13s0067g02960.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 22.62 17.43
Protein Annotations
EntrezGene:100267262wikigene:100267262MapMan:13.7.2.1ProteinID:CBI34409ProteinID:CBI34409.3UniProt:D7TV84
EMBL:FN596251GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388EntrezGene:LOC100267262wikigene:LOC100267262
PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:ReticulonTIGR:TC52635
TMHMM:TMhelixUniParc:UPI00015CD13FArrayExpress:VIT_02s0025g00640EnsemblPlantsGene:VIT_02s0025g00640EnsemblPlants:VIT_02s0025g00640.t01unigene:Vvi.7867
RefSeq:XP_002277080RefSeq:XP_002277080.2RefSeq:XP_010658515.1SEG:seg::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:D7TV84]
Coordinates
chr2:+:705930..708336
Molecular Weight (calculated)
28100.3 Da
IEP (calculated)
8.781
GRAVY (calculated)
0.125
Length
252 amino acids
Sequence
(BLAST)
001: MADHEDSTPS PVESMMEKIS EKIHGHDSSS SDSDNEKSSP SAFKAKVYRI FGREKPVHKV LGGGKPADVV LWRNKKISAG VLGGATAVWI LFELLEYHLL
101: TLVCHCSILA LAILFLWSNA TTFINKAPPH IPEVHIPEDP VLQFASALRI EINRGFTLLR NVASGKDLKK FLSVIAGLWV VSIVGSWCNF LTLFYIVFVL
201: LHTVPVLYEK YEDPVDSFAE KAMVEIKRQY AVFDAKVLSR IPRGPLKDKK IA
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.