Factsheet for VIT_06s0009g03520.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g03770.t01
VIT_10s0003g01830.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03120.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT2G03120.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT2G03120.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52673	Soybean	plasma membrane	89.44	89.44
KRH16232	Soybean	plasma membrane	89.15	89.15
KRH62014	Soybean	endoplasmic reticulum	88.86	88.86
PGSC0003DMT400024446	Potato	plasma membrane	85.92	87.2
Solyc11g064790.1.1	Tomato	plasma membrane	85.34	85.84
PGSC0003DMT400058489	Potato	plasma membrane	84.75	85.5
Solyc01g008820.2.1	Tomato	plasma membrane	84.16	84.91
CDY03017	Canola	plasma membrane	80.35	81.79
CDX88296	Canola	plasma membrane	70.97	81.76
Bra024788.1-P	Field mustard	plasma membrane	80.06	81.49
CDY45179	Canola	plasma membrane	80.06	81.49
CDY60831	Canola	plasma membrane	79.47	80.65
AT2G03120.1	Thale cress	plasma membrane	81.23	80.52
CDY17419	Canola	plasma membrane	79.18	80.36
Os02t0117400-01	Rice	plasma membrane	80.35	79.88
TraesCS6B01G064500.2	Wheat	plasma membrane	79.47	79.47
TraesCS6B01G064600.2	Wheat	plasma membrane	79.18	79.18
EES04366	Sorghum	golgi, plasma membrane	79.77	79.07
Os05t0436400-03	Rice	plasma membrane	66.28	79.02
CDY64408	Canola	plasma membrane	79.47	79.01
Bra026567.1-P	Field mustard	plasma membrane	79.47	79.01
CDY09342	Canola	plasma membrane	79.18	78.72
HORVU6Hr1G009670.1	Barley	plasma membrane	78.89	78.66
Zm00001d015006_P004	Maize	plasma membrane	79.77	78.39
TraesCS6A01G048100.2	Wheat	plasma membrane	78.59	78.36
TraesCS3D01G492200.1	Wheat	plasma membrane	78.89	78.2
TraesCSU01G107100.2	Wheat	plasma membrane	78.3	78.07
TraesCS3B01G545500.1	Wheat	plasma membrane	78.59	77.91
KXG37644	Sorghum	plasma membrane	79.47	76.77
HORVU3Hr1G108010.6	Barley	plasma membrane	76.83	75.72
CDY03016	Canola	extracellular, golgi, plasma membrane	27.27	70.99
GSMUA_Achr4P16430_001	Banana	extracellular, plasma membrane, vacuole	26.39	64.29
Zm00001d015005_P002	Maize	plasma membrane	40.47	57.98
Zm00001d054017_P003	Maize	plasma membrane	79.77	50.09
OQU87114	Sorghum	plasma membrane	38.71	36.67
VIT_16s0050g00580.t01	Wine grape	endoplasmic reticulum, plasma membrane	29.62	27.22
VIT_15s0046g02460.t01	Wine grape	plasma membrane	24.63	15.73
VIT_05s0062g01250.t01	Wine grape	plasma membrane	23.46	15.01
VIT_02s0025g03400.t01	Wine grape	plasma membrane	24.05	14.96
VIT_02s0012g02640.t01	Wine grape	golgi, plasma membrane, plastid	5.87	13.33
VIT_03s0097g00390.t01	Wine grape	mitochondrion	4.11	6.36

Protein Annotations

EntrezGene:100243157	wikigene:100243157	MapMan:18.10.1.4	MEROPS:A22.A15	ProteinID:CBI24232	ProteinID:CBI24232.3
UniProt:D7T153	EMBL:FN595504	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005765	GO:GO:0005773
GO:GO:0005783	GO:GO:0005794	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0030660	GO:GO:0071458	GO:GO:0071556
EntrezGene:LOC100243157	wikigene:LOC100243157	PFAM:PF04258	PANTHER:PTHR12174	PANTHER:PTHR12174:SF23	InterPro:Peptidase_A22B_SPP
InterPro:Preselin/SPP	SMART:SM00730	TIGR:TC56598	TMHMM:TMhelix	UniParc:UPI00019838D0	ArrayExpress:VIT_06s0009g03520
EnsemblPlantsGene:VIT_06s0009g03520	EnsemblPlants:VIT_06s0009g03520.t01	unigene:Vvi.1133	RefSeq:XP_002280005	RefSeq:XP_002280005.1	RefSeq:XP_010651509.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:16772356..16786006

Molecular Weight (calculated)

37776.7 Da

IEP (calculated)

8.458

GRAVY (calculated)

0.533

Length

341 amino acids

Sequence
(BLAST)

001: MKNCERLANL GLAGLTLAPL VMKVDPNLNV ILTACLTVYV GCYRSVKPTP PSETMSNEHA MRFPFVGSAM LLSLFLLFKF LSKDLVNAVL TCYFFVLGII
101: ALSATLLPAI RRYLPKHWND DPIIWHFPYF RSLEIEFTRS QIVAAIPGTF FCAWYASQKH WLANNILGLA FCIQGIEMLS LGSFKTGAIL LAGLFVYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTADSAR PFSMLGLGDI VIPGIFVALA LRFDVSRGKG NQYFKSAFLG YTTGLVVTIV VMNWFQAAQP ALLYIVPAVI
301: GFMAAHCIWN GEVKPLLEFD ESKTASSSKD DGDEKSSKKV E

Best Arabidopsis Sequence Match ( AT2G03120.1 )
(BLAST)

001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE

Arabidopsis Description

SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.