Factsheet for VIT_09s0002g03770.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0533g00010.t01
VIT_01s0011g04180.t01
VIT_01s0026g01890.t01
VIT_02s0012g00090.t01
VIT_02s0025g03210.t01
VIT_02s0025g04130.t01
VIT_02s0025g05160.t01
VIT_03s0038g00450.t01
VIT_03s0091g00720.t01
VIT_05s0020g02180.t01
VIT_05s0049g00200.t01
VIT_06s0004g00110.t01
VIT_11s0037g01030.t01
VIT_12s0059g01040.t01
VIT_12s0059g02290.t01
VIT_12s0059g02660.t01
VIT_13s0019g04120.t01
VIT_16s0098g01230.t01
VIT_17s0000g00110.t01
VIT_18s0072g01050.t01
VIT_19s0090g00200.t01
VIT_19s0135g00070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16310.1	VIT_05s0049g00200.t01	AT1G04340.1	21798944
AT3G16310.1	VIT_01s0026g01890.t01	AT1G14360.1	21798944
AT3G16310.1	VIT_01s0011g04180.t01	AT1G15080.1	21798944
AT3G16310.1	VIT_19s0135g00070.t01	AT1G17080.1	21798944
AT3G16310.1	VIT_06s0004g00110.t01	AT1G55535.1	21798944
AT3G16310.1	VIT_02s0025g05160.t01	AT1G62880.1	21798944
AT3G16310.1	VIT_02s0025g04130.t01	AT1G63120.1	21798944
AT3G16310.1	VIT_03s0091g00720.t01	AT2G14835.2	21798944
AT3G16310.1	VIT_11s0037g01030.t01	AT2G23910.1	21798944
AT3G16310.1	VIT_12s0059g02290.t01	AT2G32380.1	21798944
AT3G16310.1	VIT_12s0059g01040.t01	AT2G32580.1	21798944
AT3G16310.1	VIT_02s0012g00090.t01	AT2G35170.1	21798944
AT3G16310.1	VIT_13s0019g04120.t01	AT3G07950.1	21798944
AT3G16310.1	VIT_19s0090g00200.t01	AT3G20510.1	21798944
AT3G16310.1	VIT_12s0059g02660.t01	AT3G22070.1	21798944
AT3G16310.1	VIT_18s0072g01050.t01	AT4G09580.1	21798944
AT3G16310.1	VIT_02s0025g03210.t01	AT4G10430.1	21798944
AT3G16310.1	VIT_00s0533g00010.t01	AT4G16840.1	21798944
AT3G16310.1	VIT_03s0038g00450.t01	AT4G34640.1	21798944
AT3G16310.1	VIT_05s0020g02180.t01	AT5G18850.1	21798944
AT3G16310.1	VIT_05s0049g00200.t01	AT5G43460.1	21798944
AT3G16310.1	VIT_17s0000g00110.t01	AT5G51010.1	21798944
AT3G16310.1	VIT_16s0098g01230.t01	AT5G53560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09922	Soybean	endoplasmic reticulum, nucleus	79.81	76.44
KRH23409	Soybean	mitochondrion	79.18	75.83
AT3G16310.1	Thale cress	plastid	74.13	71.43
PGSC0003DMT400006495	Potato	mitochondrion, plastid	72.56	68.66
Bra027174.1-P	Field mustard	plastid	71.92	68.26
GSMUA_Achr6P14800_001	Banana	plastid	41.32	57.96
CDY30157	Canola	plastid	72.24	54.01
GSMUA_Achr4P15460_001	Banana	mitochondrion, plastid	53.0	46.93
TraesCS3B01G158900.1	Wheat	nucleus	47.32	46.88
TraesCS3A01G313000.1	Wheat	nucleus	47.32	46.88
HORVU3Hr1G026980.2	Barley	nucleus, plastid	45.74	46.62
TraesCS3D01G141300.1	Wheat	nucleus	46.37	46.23
Solyc03g120880.2.1	Tomato	nucleus	72.56	45.82
EES02290	Sorghum	nucleus, plastid	46.37	45.65
GSMUA_Achr4P08270_001	Banana	mitochondrion	40.38	44.91
Zm00001d008871_P001	Maize	mitochondrion	45.11	44.41
Os01t0200500-01	Rice	nucleus	45.74	44.34
HORVU1Hr1G076010.1	Barley	plastid	38.17	36.56
EES19830	Sorghum	mitochondrion	37.54	36.5
Os05t0520100-00	Rice	mitochondrion	37.54	35.95
Zm00001d038803_P001	Maize	mitochondrion	35.96	35.4
TraesCS1D01G342600.1	Wheat	plastid	37.54	35.0
HORVU3Hr1G071060.1	Barley	plastid	34.38	34.94
TraesCS3B01G308400.1	Wheat	plastid	34.07	34.29
CDX97739	Canola	plastid	71.61	34.03
TraesCS3D01G274500.1	Wheat	plastid	33.75	33.97
TraesCS3A01G274800.1	Wheat	plastid	33.44	33.87
Zm00001d010783_P001	Maize	plastid	36.91	33.81
TraesCS1A01G340600.1	Wheat	plastid	34.7	32.54

Protein Annotations

EntrezGene:100244686	wikigene:100244686	MapMan:23.5.1.1.6.5	Gene3D:3.30.70.330	ProteinID:CBI36082	ProteinID:CBI36082.3
UniProt:D7U0D6	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003697
GO:GO:0005215	GO:GO:0005487	GO:GO:0005488	GO:GO:0005543	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006139	GO:GO:0006355
GO:GO:0006607	GO:GO:0006810	GO:GO:0006913	GO:GO:0006999	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0031965	GO:GO:0044613	GO:GO:0044615	GO:GO:0051028	InterPro:IPR007846	InterPro:IPR012677
EntrezGene:LOC100244686	wikigene:LOC100244686	InterPro:Nucleoporin_NUP53	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05172	PIRSF:PIRSF038119
PFscan:PS51472	PANTHER:PTHR21527	InterPro:RBD_domain_sf	InterPro:RRM_NUP35_dom	SUPFAM:SSF54928	UniParc:UPI00015C858E
ArrayExpress:VIT_09s0002g03770	EnsemblPlantsGene:VIT_09s0002g03770	EnsemblPlants:VIT_09s0002g03770.t01	unigene:Vvi.7076	RefSeq:XP_002284034	RefSeq:XP_002284034.1
SEG:seg	:	:	:	:	:

Description

Nuclear pore complex protein NUP35 [Source:UniProtKB/TrEMBL;Acc:D7U0D6]

Coordinates

chr9:+:3450819..3456229

Molecular Weight (calculated)

34399.7 Da

IEP (calculated)

9.040

GRAVY (calculated)

-0.484

Length

317 amino acids

Sequence
(BLAST)

001: MSTTVQRTPR SGRQSLFFQD LASPVSSRRG KFTSSGQAAA VSALWHDNFA GSDLPPPPMY TLEDRSDFSP ESGILDYPVS PEIKSDLRTP VHGSGRDFLT
101: PVKGKSEAST SSASLSWWSP AKSGGDQEEK GKGSPVEGVV QPGALITLPP PREVARPEMQ RNCLPAGNLD EEEWVTVYGF SPGDTNLVLR EFEKCGVILK
201: HVPGPRDANW IHILYQNRSD AQKALSKNGM QINGVLIVGV KPLDPMQRQA LNERLNNQGF MTLPPPASSR SLESNPLRVS PRPYYLQNGS NARQSSGAIA
301: SPAKSVVSKI MDLMFGV

Best Arabidopsis Sequence Match ( AT3G16310.1 )
(BLAST)

001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV

Arabidopsis Description

NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.