Factsheet for VIT_03s0038g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT4G34640.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	86.44	86.44
KRH24387	Soybean	cytosol	86.2	86.2
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	81.6	82.0
CDX76294	Canola	cytosol	76.03	78.5
AT4G34640.1	Thale cress	cytosol	77.24	77.8
Bra011548.1-P	Field mustard	cytosol	74.82	77.64
CDX75450	Canola	cytosol	74.82	77.64
CDX69075	Canola	cytosol	74.58	77.39
Bra017667.1-P	Field mustard	cytosol	71.67	76.49
PGSC0003DMT400008770	Potato	cytosol	76.03	76.4
CDX72493	Canola	cytosol	77.97	75.59
CDY17472	Canola	cytosol	77.97	75.59
CDY45322	Canola	cytosol	74.33	75.43
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	73.37	73.37
CDX75451	Canola	cytosol	72.88	72.88
GSMUA_Achr4P17290_001	Banana	cytosol	51.57	72.7
Bra011549.1-P	Field mustard	cytosol	73.37	72.49
Bra034641.1-P	Field mustard	cytosol	77.24	72.34
CDX72494	Canola	cytosol	68.52	71.65
Bra017668.1-P	Field mustard	cytosol	41.89	71.19
CDY45323	Canola	cytosol	37.53	71.1
CDX69076	Canola	cytosol, plasma membrane, plastid	73.61	71.03
Solyc10g054130.1.1	Tomato	unclear	74.82	70.87
Os03t0805100-01	Rice	cytosol	67.55	69.23
EER93257	Sorghum	cytosol	65.62	67.25
Zm00001d013048_P005	Maize	cytosol	65.13	67.08
TraesCS5B01G464600.1	Wheat	cytosol	65.62	67.08
TraesCS5A01G454500.1	Wheat	cytosol	65.62	67.08
TraesCS5D01G465000.1	Wheat	cytosol	65.13	66.58
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	8.47	66.04
PGSC0003DMT400089434	Potato	cytosol	61.02	65.97
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.92	65.49
Solyc10g079040.1.1	Tomato	cytosol	47.7	63.55
Zm00001d034516_P001	Maize	cytosol	65.38	63.53
Os07t0200700-01	Rice	cytosol	62.95	63.41
Solyc10g079060.1.1	Tomato	cytosol	63.2	61.12
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	69.98	60.08
TraesCS5D01G032600.1	Wheat	cytosol	22.52	52.54
HORVU5Hr1G109300.4	Barley	mitochondrion	65.38	52.43

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	EntrezGene:100265798	wikigene:100265798	MapMan:9.1.5.1
EMBL:AM486171	ProteinID:CAN81937	ProteinID:CAN81937.1	ProteinID:CBI38008	ProteinID:CBI38008.3	UniProt:D7U5I9
EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006629	GO:GO:0006696
GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016126	GO:GO:0016740	GO:GO:0016765	GO:GO:0045338	GO:GO:0051996
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	EntrezGene:LOC100265798	wikigene:LOC100265798	PFAM:PF00494	ScanProsite:PS01044
ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS
TIGR:TC64463	TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniParc:UPI00015C89AC	ArrayExpress:VIT_03s0038g00450
EnsemblPlantsGene:VIT_03s0038g00450	EnsemblPlants:VIT_03s0038g00450.t01	RefSeq:XP_002266150	RefSeq:XP_002266150.1	RefSeq:XP_010647676.1	:

Description

No Description!

Coordinates

chr3:+:415167..427864

Molecular Weight (calculated)

47306.6 Da

IEP (calculated)

7.495

GRAVY (calculated)

-0.053

Length

413 amino acids

Sequence
(BLAST)

001: MGSLGAILTH PDDIYPLLKL KMAVRHAEKQ IPPEPHWAFC YTLLHKVSRS FGLVIQQLGT ELRNAICIFY LVLRALDTVE DDTSIRTDVK VPILIAFHRH
101: IYDRDWHFAC GTKDYKVLMD QFHHVSTAFL ELERGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YVAGLVGLGL SKLFHASKLE DLASDELSNS
201: MGLFLQKTNI IRDYLEDINE IPKSRMFWPR EIWSKYVNKL EDLKEEENSI KAVQCLNDMV TNALIHMEDC LTYMSALQSP AIFRFCAIPQ IMAIGTLALC
301: YNNIEVFRGV VKMRRGLTAK VIDRTKAMSD VYGAFFDFSC MLKSKVDKND PNATKALSRL EAVQKICRES GALTKRKSYV IRSEPRYNSA LIVAFFIILS
401: IIFAYLSANR QNN

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.