Factsheet for Solyc01g110290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G34640.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	82.0	81.6
VIT_03s0038g00450.t01	Wine grape	cytosol	82.0	81.6
KRH24387	Soybean	cytosol	81.51	81.11
Solyc10g054130.1.1	Tomato	unclear	79.32	74.77
CDX76294	Canola	cytosol	72.51	74.5
Bra011548.1-P	Field mustard	cytosol	71.78	74.12
CDX75450	Canola	cytosol	71.78	74.12
AT4G34640.1	Thale cress	cytosol	73.72	73.9
CDX69075	Canola	cytosol	71.53	73.87
Bra017667.1-P	Field mustard	cytosol	67.4	71.58
CDY17472	Canola	cytosol	73.97	71.36
GSMUA_Achr4P17290_001	Banana	cytosol	50.85	71.33
CDX72493	Canola	cytosol	72.99	70.42
Os03t0805100-01	Rice	cytosol	68.86	70.22
CDY45322	Canola	cytosol	69.1	69.78
CDX75451	Canola	cytosol	69.59	69.25
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	69.1	68.77
Bra034641.1-P	Field mustard	cytosol	73.48	68.48
Bra011549.1-P	Field mustard	cytosol	69.59	68.42
Bra017668.1-P	Field mustard	cytosol	40.39	68.31
EER93257	Sorghum	cytosol	66.42	67.74
Solyc10g079040.1.1	Tomato	cytosol	51.09	67.74
TraesCS5B01G464600.1	Wheat	cytosol	66.42	67.57
TraesCS5A01G454500.1	Wheat	cytosol	66.42	67.57
CDX69076	Canola	cytosol, plasma membrane, plastid	70.32	67.52
Zm00001d013048_P005	Maize	cytosol	65.69	67.33
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	18.49	67.26
CDX72494	Canola	cytosol	64.48	67.09
TraesCS5D01G465000.1	Wheat	cytosol	65.94	67.08
CDY45323	Canola	cytosol	34.79	65.6
Solyc10g079060.1.1	Tomato	cytosol	66.42	63.93
Zm00001d034516_P001	Maize	cytosol	65.21	63.06
Os07t0200700-01	Rice	cytosol	62.77	62.93
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	69.59	59.46
HORVU5Hr1G109300.4	Barley	mitochondrion	66.18	52.82
TraesCS5D01G032600.1	Wheat	cytosol	22.38	51.98

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016740
GO:GO:0016765	GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4B3P2
PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc01g110290.2
EnsemblPlants:Solyc01g110290.2.1	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix
InterPro:Trans_IPPS_HH	UniParc:UPI0002768F9B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:97018562..97026183

Molecular Weight (calculated)

47004.4 Da

IEP (calculated)

7.456

GRAVY (calculated)

-0.024

Length

411 amino acids

Sequence
(BLAST)

001: MGTLRAILKN PDDLYPLIKL KLAARHAEKQ IPPEPHWGFC YLMLQKVSRS FALVIQQLPV ELRDAVCIFY LVLRALDTVE DDTSIPTDVK VPILISFHQH
101: VYDREWHFAC GTKEYKVLMD QFHHVSTAFL ELGKLYQQAI EDITMRMGAG MAKFICKEVE TTDDYDEYCH YVAGLVGLGL SKLFHASGKE DLASDSLSNS
201: MGLFLQKTNI IRDYLEDINE VPKCRMFWPR EIWSKYVNKL EDLKYEENSV KAVQCLNDMV TNALSHVEDC LTYMFNLHDP AIFRFCAIPQ VMAIGTLAMC
301: YDNIEVFRGV VKMRRGLTAK VIDRTKTMAD VYGAFFDFSC MLKSKVNNND PNATKTLKRL DAILKTCRDS GTLNKRKSYI IRNEPNYSPV LIVVIFIILA
401: IILAQLSGSR S

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.