CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75451	Canola	cytosol	91.82	95.16
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	82.01	84.99
CDX72494	Canola	cytosol	78.27	84.81
CDY45323	Canola	cytosol	42.29	83.03
CDX75450	Canola	cytosol	74.53	80.15
CDX69075	Canola	cytosol	74.3	79.9
CDX76294	Canola	cytosol	74.53	79.75
CDX72493	Canola	cytosol	76.87	77.23
CDY45322	Canola	cytosol	73.13	76.9
CDY17472	Canola	cytosol	76.4	76.76
KRH24387	Soybean	cytosol	71.5	74.09
VIT_03s0038g00450.t01	Wine grape	cytosol	71.03	73.61
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	70.33	72.88
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	67.52	70.32
PGSC0003DMT400008770	Potato	cytosol	64.95	67.64
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.52	66.37
GSMUA_Achr4P17290_001	Banana	cytosol	44.16	64.51
PGSC0003DMT400089434	Potato	cytosol	56.78	63.61
Zm00001d013048_P005	Maize	cytosol	58.88	62.84
Solyc10g054130.1.1	Tomato	unclear	63.78	62.61
Os03t0805100-01	Rice	cytosol	58.88	62.53
TraesCS5A01G454500.1	Wheat	cytosol	58.88	62.38
EER93257	Sorghum	cytosol	58.64	62.28
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.71	62.26
TraesCS5B01G464600.1	Wheat	cytosol	58.64	62.13
TraesCS5D01G465000.1	Wheat	cytosol	58.18	61.63
Solyc10g079040.1.1	Tomato	cytosol	44.16	60.97
Os07t0200700-01	Rice	cytosol	57.94	60.49
Zm00001d034516_P001	Maize	cytosol	57.94	58.35
Solyc10g079060.1.1	Tomato	cytosol	57.48	57.61
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	62.38	55.51
TraesCS5D01G032600.1	Wheat	cytosol	20.79	50.28
HORVU5Hr1G109300.4	Barley	mitochondrion	57.94	48.16

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:A0A078BW95	EnsemblPlants:CDX69076
ProteinID:CDX69076	ProteinID:CDX69076.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575
GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0051996	EnsemblPlantsGene:GSBRNA2T00130851001
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	PANTHER:PTHR11626	MetaCyc:PWY-5670	SUPFAM:SSF48576
InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniPathway:UPA00767
UniParc:UPI0004EED185	SEG:seg	:	:	:	:

Description

BnaC01g03770D

Coordinates

chrLK031789:+:2796173..2799000

Molecular Weight (calculated)

48847.8 Da

IEP (calculated)

7.298

GRAVY (calculated)

-0.033

Length

428 amino acids

Sequence
(BLAST)

001: MGSLSTILRH PDEIYPLLKL KLAIIKAQNQ IPLDDPHLAL CYSLLQKVSR SFSLVIQQLG TELRDAVCVF YLILRALDTV EDDTSIPMEI KVPILLAFHR
101: HIYDRDWHFI CGTEEYKVLM DQFHHVSAAF LELEKGYQEA IEDITKRMGA GMAKFISREV ETVDEYDEYC HYAAGLVGLG LSKLLLASGL EVLTPDWKQI
201: SNSTGLFLQK TNIIKDYLED INEIPKPRMF WPREIWGKYV DKLEDLKNEE NSTKAVQCLN EMVTNALIHV EVCLKSMAGL RDPAIFKSCS IPQIVAMGTL
301: ALCYNNVQVF RGVVKLRRGL IAKVIDRTKT MDDVYGAFYD FSCMLKTKVD KNDPNAIKTL KRLEAIEKVC RENGDLHKRK SYVNNETQSK ALLFLMLVPL
401: LAILVLAYLK HTHINASDRL FNLVNSRS

Best Arabidopsis Sequence Match ( AT4G34650.1 )
(BLAST)

001: MGSLSTILRH PDELYPLLKL KLAITKAQKQ IPLEPHLAFC YSILHKVSKS FSLVIQQLGT ELRNAVCVFY LILRALDTVE DDTSVPVEIK VPILIAFHRH
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK

Arabidopsis Description

SQS2Inactive squalene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65688]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.