CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26664
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	KRH11076	AT4G19030.1	21798944
AT4G34640.1	KRH21197	AT4G19030.1	21798944
AT4G34640.1	KRH42923	AT4G19030.1	21798944
AT4G34640.1	KRH42926	AT4G19030.1	21798944
AT4G34640.1	KRH45251	AT4G19030.1	21798944
AT4G34640.1	KRH59035	AT4G19030.1	21798944
AT4G34640.1	KRH59036	AT4G19030.1	21798944
AT4G34640.1	KRH22653	AT5G22290.1	21798944
AT4G34640.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	96.85	96.85
VIT_03s0038g00450.t01	Wine grape	cytosol	86.2	86.2
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	81.11	81.51
CDX76294	Canola	cytosol	77.72	80.25
CDX69075	Canola	cytosol	76.76	79.65
Bra011548.1-P	Field mustard	cytosol	76.76	79.65
CDX75450	Canola	cytosol	76.76	79.65
AT4G34640.1	Thale cress	cytosol	78.69	79.27
Bra017667.1-P	Field mustard	cytosol	73.37	78.29
CDY17472	Canola	cytosol	80.39	77.93
CDX72493	Canola	cytosol	79.9	77.46
CDY45322	Canola	cytosol	76.03	77.15
PGSC0003DMT400008770	Potato	cytosol	76.51	76.89
Bra034641.1-P	Field mustard	cytosol	79.18	74.15
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	73.85	73.85
KRH58230	Soybean	mitochondrion	14.29	73.75
CDX75451	Canola	cytosol	72.64	72.64
Bra011549.1-P	Field mustard	cytosol	73.37	72.49
CDX72494	Canola	cytosol	68.52	71.65
CDX69076	Canola	cytosol, plasma membrane, plastid	74.09	71.5
Solyc10g054130.1.1	Tomato	unclear	75.06	71.1
CDY45323	Canola	cytosol	37.29	70.64
Bra017668.1-P	Field mustard	cytosol	41.4	70.37
PGSC0003DMT400089434	Potato	cytosol	64.16	69.37
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	8.72	67.92
Solyc10g079040.1.1	Tomato	cytosol	50.12	66.77
Solyc10g079060.1.1	Tomato	cytosol	64.41	62.3

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	EntrezGene:547940	MapMan:9.1.5.1	UniProt:A0A0R4J4H6
EMBL:ACUP02007175	EnsemblPlantsGene:GLYMA_12G038200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575
GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016765	GO:GO:0051996
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	ProteinID:KRH24386.1	EnsemblPlants:KRH24387	ProteinID:KRH24387	ProteinID:KRH24387.1
ProteinID:KRH24388.1	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626	MetaCyc:PWY-5670
SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix
InterPro:Trans_IPPS_HH	UniParc:UPI0001CA94AF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:2750945..2757361

Molecular Weight (calculated)

47112.2 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.091

Length

413 amino acids

Sequence
(BLAST)

001: MGSLGAILKH PDDFYPLLKL KMAARNAEKQ IPPEPHWAFC YTMLHKVSRS FALVIQQLGT ELRNAVCIFY LVLRALDTVE DDTSIETDVK VPILIAFHRH
101: IYDRDWHFSC GTKEYKVLMD QFHHVSTAFL ELGKNYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YVAGLVGLGL SKLFHASGSE DLAPDDLSNS
201: MGLFLQKTNI IRDYLEDINE IPKSRMFWPR QIWSEYVNKL EDLKYEENSV KAVQCLNDMV TNALMHAEDC LKYMAALRDP PIFRFCAIPQ IMAIGTLALC
301: YNNIEVFRGV VKMRRGLTAK VIDRTKTMAD VYGAFFDFAS MLEPKVDKND PNATKTLSRL EAIQKTCRES GLLSKRKSYI VNDESGYGST MIVILVIMVS
401: IIFAYLSANH HNS

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.