Factsheet for Bra017667.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	Bra012567.1-P	AT4G19030.1	21798944
AT4G34640.1	Bra013361.1-P	AT4G19030.1	21798944
AT4G34640.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G34640.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G34640.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45322	Canola	cytosol	95.09	90.42
Bra011548.1-P	Field mustard	cytosol	89.66	87.19
AT4G34640.1	Thale cress	cytosol	89.15	84.15
Bra034641.1-P	Field mustard	cytosol	90.7	79.59
Bra017668.1-P	Field mustard	cytosol	46.51	74.07
KRH24387	Soybean	cytosol	78.29	73.37
Bra011549.1-P	Field mustard	cytosol	78.04	72.25
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	76.74	71.91
VIT_03s0038g00450.t01	Wine grape	cytosol	76.49	71.67
GSMUA_Achr4P17290_001	Banana	cytosol	51.42	67.92
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	71.58	67.4
PGSC0003DMT400008770	Potato	cytosol	68.99	64.96
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	8.79	64.15
Solyc10g079040.1.1	Tomato	cytosol	49.35	61.61
Os03t0805100-01	Rice	cytosol	63.31	60.79
EER93257	Sorghum	cytosol	62.79	60.3
Zm00001d013048_P005	Maize	cytosol	62.27	60.1
Solyc10g054130.1.1	Tomato	unclear	67.7	60.09
TraesCS5A01G454500.1	Wheat	cytosol	62.27	59.65
TraesCS5B01G464600.1	Wheat	cytosol	62.02	59.41
TraesCS5D01G465000.1	Wheat	cytosol	61.5	58.91
PGSC0003DMT400089434	Potato	cytosol	57.88	58.64
Os07t0200700-01	Rice	cytosol	61.24	57.8
Zm00001d034516_P001	Maize	cytosol	61.76	56.24
Solyc10g079060.1.1	Tomato	cytosol	59.69	54.1
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	63.82	51.35
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	14.73	50.44
HORVU5Hr1G109300.4	Barley	mitochondrion	62.02	46.6
TraesCS5D01G032600.1	Wheat	cytosol	18.6	40.68

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	EnsemblPlantsGene:Bra017667	EnsemblPlants:Bra017667.1
EnsemblPlants:Bra017667.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0006629
GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016765	GO:GO:0051996	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	UniProt:M4DMD4	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626
SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix
InterPro:Trans_IPPS_HH	UniParc:UPI0002541283	:	:	:	:

Description

AT4G34640 (E=2e-157) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase

Coordinates

chrA03:+:29629795..29632228

Molecular Weight (calculated)

44125.8 Da

IEP (calculated)

8.082

GRAVY (calculated)

-0.104

Length

387 amino acids

Sequence
(BLAST)

001: MGSLGTFLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWAFC YSMLHKVSRS FSLVIQQLGT ELRNAVCVFY LVLRALDTVG GTKEYKVLMD QLHHVSAAFL
101: ELEKGYQEAI EEITKRMGAG MAKFICHEVE TVDDYDEYCH YVAGLVGLGL SKLFLASGSE VLTPDWEHIS NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW
201: PRKIWGKYAG KLEDLKYEKN SSNAVQCLNE MVTNALTHIE DCLKYMAALR DPSIFRFCAI PQIMAIGTLA LCYNNVQVFR GVVKLRRGLT AKVIDRTKTM
301: ADVYGAFYDF SCMLKTKVDK NEPNASKTLK QLEDVQQLCR DNGVLHKRKS YVNDKGQSNN LYIVMLVILL AIVFAYLRAN GVVSDEQ

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.