Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011548.1-P | Field mustard | cytosol | 88.78 | 91.46 |
| CDX75450 | Canola | cytosol | 88.78 | 91.46 |
| CDX76294 | Canola | cytosol | 89.02 | 91.25 |
| CDX69075 | Canola | cytosol | 88.54 | 91.21 |
| Bra017667.1-P | Field mustard | cytosol | 84.15 | 89.15 |
| CDX72493 | Canola | cytosol | 91.95 | 88.5 |
| CDY17472 | Canola | cytosol | 91.95 | 88.5 |
| CDY45322 | Canola | cytosol | 87.8 | 88.45 |
| Bra034641.1-P | Field mustard | cytosol | 90.98 | 84.58 |
| KRH24387 | Soybean | cytosol | 79.27 | 78.69 |
| AT4G34650.1 | Thale cress | cytosol, nucleus, plasma membrane | 79.02 | 78.45 |
| KRH29364 | Soybean | endoplasmic reticulum, mitochondrion | 78.54 | 77.97 |
| VIT_03s0038g00450.t01 | Wine grape | cytosol | 77.8 | 77.24 |
| Solyc01g110290.2.1 | Tomato | cytosol, nucleus, unclear | 73.9 | 73.72 |
| PGSC0003DMT400008770 | Potato | cytosol | 69.27 | 69.1 |
| GSMUA_Achr4P17270_001 | Banana | cytosol, extracellular, plastid | 19.02 | 69.03 |
| GSMUA_Achr4P17290_001 | Banana | cytosol | 48.54 | 67.92 |
| Os03t0805100-01 | Rice | cytosol | 66.34 | 67.49 |
| Zm00001d013048_P005 | Maize | cytosol | 65.37 | 66.83 |
| EER93257 | Sorghum | cytosol | 65.37 | 66.5 |
| TraesCS5A01G454500.1 | Wheat | cytosol | 64.15 | 65.1 |
| TraesCS5B01G464600.1 | Wheat | cytosol | 63.66 | 64.6 |
| Solyc10g054130.1.1 | Tomato | unclear | 68.54 | 64.45 |
| Os07t0200700-01 | Rice | cytosol | 64.15 | 64.15 |
| TraesCS5D01G465000.1 | Wheat | cytosol | 63.17 | 64.11 |
| PGSC0003DMT400089434 | Potato | cytosol | 58.54 | 62.83 |
| Zm00001d034516_P001 | Maize | cytosol | 64.63 | 62.35 |
| PGSC0003DMT400021134 | Potato | cytosol, extracellular, peroxisome | 8.05 | 62.26 |
| Solyc10g079040.1.1 | Tomato | cytosol | 44.88 | 59.35 |
| GSMUA_Achr2P12480_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 66.59 | 56.76 |
| Solyc10g079060.1.1 | Tomato | cytosol | 59.02 | 56.67 |
| HORVU5Hr1G109300.4 | Barley | mitochondrion | 63.66 | 50.68 |
| TraesCS5D01G032600.1 | Wheat | cytosol | 21.71 | 50.28 |
Protein Annotations
| KEGG:00100+2.5.1.21 | KEGG:00909+2.5.1.21 | Gene3D:1.10.600.10 | EntrezGene:829616 | MapMan:9.1.5.1 | ProteinID:AAB62242.1 |
| ProteinID:AEE86403.1 | ArrayExpress:AT4G34640 | EnsemblPlantsGene:AT4G34640 | RefSeq:AT4G34640 | TAIR:AT4G34640 | RefSeq:AT4G34640-TAIR-G |
| EnsemblPlants:AT4G34640.1 | TAIR:AT4G34640.1 | EMBL:AY099868 | EMBL:BT003419 | ProteinID:CAA18843.1 | ProteinID:CAB80181.1 |
| EMBL:D29017 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004310 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 | GO:GO:0006629 |
| GO:GO:0006696 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008299 | GO:GO:0008610 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016126 | GO:GO:0016491 | GO:GO:0016740 |
| GO:GO:0016765 | GO:GO:0045338 | GO:GO:0051996 | GO:GO:0055114 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf |
| RefSeq:NP_195190.1 | UniProt:P53799 | PFAM:PF00494 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01044 | ScanProsite:PS01045 | PANTHER:PTHR11626 |
| Symbol:SQS1 | SUPFAM:SSF48576 | InterPro:Squ/phyt_synthse | InterPro:Squal_synth-like | InterPro:Squalene/phytoene_synthase_CS | TIGRFAMs:TIGR01559 |
| TMHMM:TMhelix | InterPro:Trans_IPPS_HH | EMBL:U79159 | UniParc:UPI00000011AE | EMBL:X86692 | : |
Description
SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
Coordinates
chr4:+:16538189..16542024
Molecular Weight (calculated)
47144.3 Da
IEP (calculated)
6.594
GRAVY (calculated)
-0.129
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.