Factsheet for Os07t0200700-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0805100-01	Rice	cytosol	77.07	78.41
GSMUA_Achr4P17290_001	Banana	cytosol	49.27	68.94
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	18.78	68.14
Bra011548.1-P	Field mustard	cytosol	62.68	64.57
CDX75450	Canola	cytosol	62.68	64.57
AT4G34640.1	Thale cress	cytosol	64.15	64.15
CDX76294	Canola	cytosol	62.44	64.0
CDX69075	Canola	cytosol	61.95	63.82
VIT_03s0038g00450.t01	Wine grape	cytosol	63.41	62.95
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	62.93	62.77
PGSC0003DMT400008770	Potato	cytosol	62.2	62.04
CDY17472	Canola	cytosol	64.39	61.97
CDY45322	Canola	cytosol	61.46	61.92
Bra017668.1-P	Field mustard	cytosol	36.59	61.73
CDX72493	Canola	cytosol	63.66	61.27
Bra017667.1-P	Field mustard	cytosol	57.8	61.24
KRH58230	Soybean	mitochondrion	11.71	60.0
Bra011549.1-P	Field mustard	cytosol	60.73	59.57
CDX75451	Canola	cytosol	60.0	59.56
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	69.51	59.25
Bra034641.1-P	Field mustard	cytosol	63.66	59.18
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	59.51	59.08
PGSC0003DMT400089434	Potato	cytosol	54.88	58.9
Solyc10g079040.1.1	Tomato	cytosol	44.15	58.39
CDX69076	Canola	cytosol, plasma membrane, plastid	60.49	57.94
CDX72494	Canola	cytosol	55.37	57.47
Solyc10g054130.1.1	Tomato	unclear	60.98	57.34
CDY45323	Canola	cytosol	30.24	56.88
Solyc10g079060.1.1	Tomato	cytosol	54.39	52.22
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	6.59	50.94

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	EntrezGene:4342663	MapMan:9.1.5.1	EMBL:AK063341
ProteinID:BAC84212.1	ProteinID:BAF21043.1	ProteinID:BAT00496.1	ProteinID:EEE66758.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016740
GO:GO:0016765	GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlantsGene:Os07g0200700
EnsemblPlants:Os07t0200700-01	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626	UniProt:Q6Z368
SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix
InterPro:Trans_IPPS_HH	UniParc:UPI00001BF5EF	RefSeq:XP_015644684.1	SEG:seg	:	:

Description

Similar to Squalene synthase (EC 2.5.1.21). (Os07t0200700-01)

Coordinates

chr7:+:5440357..5445784

Molecular Weight (calculated)

46786.9 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.023

Length

410 amino acids

Sequence
(BLAST)

001: MGVVGALLGP EAEALVRLRA AAWRLRREVA AATDDDEHWA FAYSMLHRVS RSFAIVIQQL GPDLRNAVCV FYLVLRALDT VEDDTSIPTE IKVPILQEFH
101: RHIYNRDWHF SCGTKDCKIL MDKFHYVLTA FLELGSGYQE AIEEITRRMG AGMAKFICKE VETVDDYDEY CHYVAGLVGI GLSRLFHAAG LEDLAPESLS
201: NSMGLFLQKV NITRDYLEDI NEIPKSRMFW PREIWSKYVD KLEDLKYENN SVKAVKCLNE MVTNGLIHTE DCLRYMSALK DITILRFCAI PQVMALATYA
301: LCYNNVNVFR GVVKLRRGLT ARIINETNSM ADVYTAFYEF SSLLAEKIDD NDPNASLTRK RVNAIKETCK SSGLLKIRGY DLDRPKRNPA MIMMLLLLLV
401: AIFLGALYRR

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.