CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 6
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	53.75	38.05
TraesCS5D01G032600.1	Wheat	cytosol	52.5	23.73
KRH24387	Soybean	cytosol	73.75	14.29
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	73.75	14.29
Zm00001d013048_P005	Maize	cytosol	61.25	12.22
EER93257	Sorghum	cytosol	60.0	11.91
Os07t0200700-01	Rice	cytosol	60.0	11.71
Os03t0805100-01	Rice	cytosol	58.75	11.66
Zm00001d034516_P001	Maize	cytosol	60.0	11.29
TraesCS5A01G454500.1	Wheat	cytosol	55.0	10.89
TraesCS5B01G464600.1	Wheat	cytosol	55.0	10.89
TraesCS5D01G465000.1	Wheat	cytosol	53.75	10.64
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	57.5	9.56
HORVU5Hr1G109300.4	Barley	mitochondrion	55.0	8.54
GSMUA_Achr4P17290_001	Banana	cytosol	3.75	1.02

Protein Annotations

Gene3D:1.10.600.10	MapMan:35.1	EMBL:ACUP02003234	EnsemblPlantsGene:GLYMA_05G113900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016126	GO:GO:0016740	GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	UniProt:K7KPM5	EnsemblPlants:KRH58230	ProteinID:KRH58230	ProteinID:KRH58230.1	PANTHER:PTHR11626
SUPFAM:SSF48576	UniParc:UPI000294ADD6	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:30159777..30160146

Molecular Weight (calculated)

9397.2 Da

IEP (calculated)

6.868

GRAVY (calculated)

0.151

Length

80 amino acids

Sequence
(BLAST)

1: MLHKVSRSFT LVIHQLGTEL RNAASTSHFS FYLHRSAEDD TSIETDVKVP ILIAFHCHIY DRDWHFSCEC VILFCFSFFK

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.