Factsheet for TraesCS5D01G032600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	45.2	70.8
KRH58230	Soybean	mitochondrion	23.73	52.5
TraesCS5D01G465000.1	Wheat	cytosol	78.53	34.41
CDY45323	Canola	cytosol	41.81	33.95
Zm00001d013048_P005	Maize	cytosol	66.1	29.18
Os03t0805100-01	Rice	cytosol	66.1	29.03
EER93257	Sorghum	cytosol	65.54	28.78
Zm00001d034516_P001	Maize	cytosol	64.41	26.82
PGSC0003DMT400008770	Potato	cytosol	52.54	22.63
VIT_03s0038g00450.t01	Wine grape	cytosol	52.54	22.52
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	51.98	22.38
PGSC0003DMT400089434	Potato	cytosol	47.46	21.99
CDX69075	Canola	cytosol	49.15	21.86
CDX72493	Canola	cytosol	52.54	21.83
CDY17472	Canola	cytosol	52.54	21.83
AT4G34640.1	Thale cress	cytosol	50.28	21.71
Bra011548.1-P	Field mustard	cytosol	48.59	21.61
CDX75450	Canola	cytosol	48.59	21.61
Bra011549.1-P	Field mustard	cytosol	50.85	21.53
CDX76294	Canola	cytosol	48.59	21.5
Solyc10g054130.1.1	Tomato	unclear	52.54	21.33
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	49.72	21.31
CDX75451	Canola	cytosol	49.72	21.31
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	57.63	21.21
Solyc10g079040.1.1	Tomato	cytosol	36.72	20.97
CDY45322	Canola	cytosol	48.02	20.88
Bra034641.1-P	Field mustard	cytosol	51.98	20.86
CDX69076	Canola	cytosol, plasma membrane, plastid	50.28	20.79
CDX72494	Canola	cytosol	45.76	20.51
Solyc10g079060.1.1	Tomato	cytosol	46.89	19.44
Bra017667.1-P	Field mustard	cytosol	40.68	18.6
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	2.82	9.43
GSMUA_Achr4P17290_001	Banana	cytosol	12.43	7.51
Bra017668.1-P	Field mustard	cytosol	10.17	7.41

Protein Annotations

EnsemblPlants:TraesCS5D01G032600.1	EnsemblPlantsGene:TraesCS5D01G032600	Gene3D:1.10.600.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Squ/phyt_synthse
PANTHER:PTHR11626	PFAM:PF00494	SUPFAM:SSF48576	MapMan:9.1.5.1	:	:

Description

No Description!

Coordinates

chr5D:-:30065255..30066784

Molecular Weight (calculated)

20654.1 Da

IEP (calculated)

8.315

GRAVY (calculated)

-0.063

Length

177 amino acids

Sequence
(BLAST)

001: MGVLSRPEEV PALVRLKLAA GRIRREIPPQ EHWAFAYDML QRVSRSFALV IQQLGPDLRN AVCVFYLVLR ALDTVEDDTA IPNEVKLPIL RDFYRHIYNP
101: DWLFSCGAND YRVLMDYFRQ VSTAFLELGE GLYMHSRYVF SPTPWHQGGR VCREQQYMVV GFHFLPPRCF RSVIQGL

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.