Factsheet for Bra017668.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72494	Canola	cytosol	93.0	57.22
GSMUA_Achr4P17290_001	Banana	cytosol	64.2	53.24
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	10.7	49.06
Bra011549.1-P	Field mustard	cytosol	83.13	48.33
Bra017667.1-P	Field mustard	cytosol	74.07	46.51
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	79.01	46.49
Bra011548.1-P	Field mustard	cytosol	74.49	45.48
CDY45323	Canola	cytosol	37.86	42.2
VIT_03s0038g00450.t01	Wine grape	cytosol	71.19	41.89
KRH24387	Soybean	cytosol	70.37	41.4
Solyc10g079040.1.1	Tomato	cytosol	52.67	41.29
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	69.96	41.16
Bra034641.1-P	Field mustard	cytosol	73.66	40.59
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	68.31	40.39
PGSC0003DMT400008770	Potato	cytosol	64.61	38.2
Os03t0805100-01	Rice	cytosol	62.96	37.97
PGSC0003DMT400089434	Potato	cytosol	59.26	37.7
Zm00001d013048_P005	Maize	cytosol	61.73	37.41
TraesCS5A01G454500.1	Wheat	cytosol	62.14	37.38
EER93257	Sorghum	cytosol	61.73	37.22
TraesCS5B01G464600.1	Wheat	cytosol	61.73	37.13
TraesCS5D01G465000.1	Wheat	cytosol	61.32	36.88
Os07t0200700-01	Rice	cytosol	61.73	36.59
Solyc10g054130.1.1	Tomato	unclear	64.2	35.78
Zm00001d034516_P001	Maize	cytosol	61.73	35.29
Solyc10g079060.1.1	Tomato	cytosol	57.61	32.79
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	64.2	32.43
HORVU5Hr1G109300.4	Barley	mitochondrion	61.73	29.13
TraesCS5D01G032600.1	Wheat	cytosol	7.41	10.17
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	0.41	0.88

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	EnsemblPlantsGene:Bra017668	EnsemblPlants:Bra017668.1
EnsemblPlants:Bra017668.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M4DMD5	PFAM:PF00494	PANTHER:PTHR11626	SUPFAM:SSF48576
InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	TIGRFAMs:TIGR01559	UniParc:UPI0002541284	SEG:seg	:

Description

AT4G34650 (E=8e-107) SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase

Coordinates

chrA03:+:29640261..29641674

Molecular Weight (calculated)

27577.4 Da

IEP (calculated)

4.711

GRAVY (calculated)

-0.042

Length

243 amino acids

Sequence
(BLAST)

001: MEQFHHVSAA FLELEKGYQE IIEDITKRMG AGMAKFISKE VETVDDYDEY CHYAAGLVGL GMSKLLLSSE LETVTPNWEQ LSNSTGLFLQ KTNIIKDYFE
101: DVNEIPKPRM FWPRETWGKY VDKLEDLKDE DKSTKAVQCL NDMITNALIH VEDCLKSMAA LHDPAILQSC SIPLIVAIGT LALCYNNVQV FRGSLKLRRG
201: LIAKVFDRTK TMDDVCGAFY DFSCMLETKV CCILYSSLEC SLF

Best Arabidopsis Sequence Match ( AT4G34650.1 )
(BLAST)

001: MGSLSTILRH PDELYPLLKL KLAITKAQKQ IPLEPHLAFC YSILHKVSKS FSLVIQQLGT ELRNAVCVFY LILRALDTVE DDTSVPVEIK VPILIAFHRH
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK

Arabidopsis Description

SQS2Inactive squalene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65688]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.