Factsheet for Bra011549.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75451	Canola	cytosol	96.65	97.82
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	84.45	85.47
Bra017668.1-P	Field mustard	cytosol	48.33	83.13
Bra011548.1-P	Field mustard	cytosol	75.6	79.4
Bra017667.1-P	Field mustard	cytosol	72.25	78.04
KRH24387	Soybean	cytosol	72.49	73.37
VIT_03s0038g00450.t01	Wine grape	cytosol	72.49	73.37
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	71.53	72.4
Bra034641.1-P	Field mustard	cytosol	76.32	72.34
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	68.42	69.59
PGSC0003DMT400008770	Potato	cytosol	66.03	67.15
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	17.7	65.49
GSMUA_Achr4P17290_001	Banana	cytosol	45.45	64.85
PGSC0003DMT400089434	Potato	cytosol	58.37	63.87
Zm00001d013048_P005	Maize	cytosol	60.05	62.59
Solyc10g054130.1.1	Tomato	unclear	65.07	62.39
TraesCS5A01G454500.1	Wheat	cytosol	60.29	62.38
TraesCS5B01G464600.1	Wheat	cytosol	60.05	62.13
EER93257	Sorghum	cytosol	59.81	62.03
Os03t0805100-01	Rice	cytosol	59.81	62.03
TraesCS5D01G465000.1	Wheat	cytosol	59.57	61.63
Os07t0200700-01	Rice	cytosol	59.57	60.73
Solyc10g079040.1.1	Tomato	cytosol	44.98	60.65
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.66	60.38
Zm00001d034516_P001	Maize	cytosol	59.33	58.35
Solyc10g079060.1.1	Tomato	cytosol	58.85	57.61
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	63.64	55.3
TraesCS5D01G032600.1	Wheat	cytosol	21.53	50.85
HORVU5Hr1G109300.4	Barley	mitochondrion	59.09	47.96

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	EnsemblPlantsGene:Bra011549	EnsemblPlants:Bra011549.1
EnsemblPlants:Bra011549.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575	GO:GO:0006629
GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
UniProt:M4D4Z2	PFAM:PF00494	PANTHER:PTHR11626	SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like
TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniParc:UPI00025456F6	SEG:seg	:

Description

AT4G34650 (E=9e-194) SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase

Coordinates

chrA01:-:1720689..1723172

Molecular Weight (calculated)

47629.2 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.079

Length

418 amino acids

Sequence
(BLAST)

001: MGSLSTILRH PDEIYPLLRL KLAIMKAQNQ IPLDDPHLAV CYSLLQKVSR SFSLVIQQLG TELRDAVCVF YLILRALDTV EDDTSIPIEI KVPILLAFHR
101: HIYDRDWHFT CGTKEYKVLM DQFHHVSAAF LELEEGYQEA IEDITKRMGA GMAKFISKEV ETVDDYDEYC HYAAGLVGLG LSKLLLTSGL ETLTPDWQQI
201: SNSTGLFLQK TNIIKDYLED INEIPKPRMF WPREIWGKYV DKLEDLKNEE KSTKAVQCLN EMVTNALIHV EDCLKSMAGL RDPAIFKSCA IPQIVAMGTL
301: ALCYNNVQVF RGAVKLRRGL IAKVIDRTKT MGDVYGAFYD FSCMLKTKVD KNDPNAMKTL QRLETIEKVC RENGDLHKRK SYVNDETQSK ALLFLMLVPL
401: LALLVLAYLK HTHINASD

Best Arabidopsis Sequence Match ( AT4G34650.1 )
(BLAST)

001: MGSLSTILRH PDELYPLLKL KLAITKAQKQ IPLEPHLAFC YSILHKVSKS FSLVIQQLGT ELRNAVCVFY LILRALDTVE DDTSVPVEIK VPILIAFHRH
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK

Arabidopsis Description

SQS2Inactive squalene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65688]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.