CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011549.1-P	Field mustard	cytosol	97.82	96.65
CDX69076	Canola	cytosol, plasma membrane, plastid	95.16	91.82
CDX72494	Canola	cytosol	82.57	86.33
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	85.47	85.47
CDY45323	Canola	cytosol	43.83	83.03
CDX75450	Canola	cytosol	76.51	79.4
CDX69075	Canola	cytosol	76.27	79.15
CDX76294	Canola	cytosol	76.51	79.0
CDX72493	Canola	cytosol	78.69	76.29
CDY45322	Canola	cytosol	74.82	75.92
CDY17472	Canola	cytosol	78.21	75.82
VIT_03s0038g00450.t01	Wine grape	cytosol	72.88	72.88
KRH24387	Soybean	cytosol	72.64	72.64
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	71.67	71.67
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	69.25	69.59
PGSC0003DMT400008770	Potato	cytosol	67.31	67.64
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	18.16	66.37
GSMUA_Achr4P17290_001	Banana	cytosol	45.76	64.51
PGSC0003DMT400089434	Potato	cytosol	58.84	63.61
Zm00001d013048_P005	Maize	cytosol	61.02	62.84
Solyc10g054130.1.1	Tomato	unclear	66.1	62.61
EER93257	Sorghum	cytosol	60.53	62.03
TraesCS5A01G454500.1	Wheat	cytosol	60.53	61.88
Os03t0805100-01	Rice	cytosol	60.29	61.79
TraesCS5B01G464600.1	Wheat	cytosol	60.29	61.63
TraesCS5D01G465000.1	Wheat	cytosol	59.81	61.14
Solyc10g079040.1.1	Tomato	cytosol	45.76	60.97
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.75	60.38
Os07t0200700-01	Rice	cytosol	59.56	60.0
Zm00001d034516_P001	Maize	cytosol	59.81	58.12
Solyc10g079060.1.1	Tomato	cytosol	59.56	57.61
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	63.92	54.89
TraesCS5D01G032600.1	Wheat	cytosol	21.31	49.72
HORVU5Hr1G109300.4	Barley	mitochondrion	59.32	47.57

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:A0A078CEA3	EnsemblPlants:CDX75451
ProteinID:CDX75451	ProteinID:CDX75451.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004310	GO:GO:0005575
GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0051996	EnsemblPlantsGene:GSBRNA2T00121344001
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00494	PANTHER:PTHR11626	MetaCyc:PWY-5670	SUPFAM:SSF48576
InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniPathway:UPA00767
UniParc:UPI0004EF37EB	SEG:seg	:	:	:	:

Description

BnaA01g02510D

Coordinates

chrLK031804:+:1150478..1153002

Molecular Weight (calculated)

47173.7 Da

IEP (calculated)

6.581

GRAVY (calculated)

-0.075

Length

413 amino acids

Sequence
(BLAST)

001: MGSLSTILRH PDEIYPLLKL KLAIMKAQNQ IPLDDPHLAI CYSLLQKVSR SFSLVIQQLG TELRDAVCVF YLILRALDTV EDDTSIPMEI KVPILLAFHR
101: HIYDRGWHFT CGTEEYKVLM DQFHHVSAAF LELEEGYQEA IEDITKRMGA GMAKFISKEV ETVDDYDEYC HYAAGLVGLG LSKLLLTSGL ETLTPDWQQI
201: SNSTGLFLQK TNIIKDYLED INEIPKPRMF WPREIWGKYV DKLEDLKNEE KSTKAVQCLN EMVTNALIHV EDCLKSMAGL RDPAIFKSCA IPQIVAMGTL
301: ALCYNNVQVF RGAVKLRRGL IAKVIDRTKT MDDVYGAFYD FSCMLKTKVD KKDPNAMKTL QRLETIEKVC RENGDLHKRK SYVNDETQSK ALLFLMLVPL
401: LAILVLAYLK HTY

Best Arabidopsis Sequence Match ( AT4G34650.1 )
(BLAST)

001: MGSLSTILRH PDELYPLLKL KLAITKAQKQ IPLEPHLAFC YSILHKVSKS FSLVIQQLGT ELRNAVCVFY LILRALDTVE DDTSVPVEIK VPILIAFHRH
101: IYDGDWHFSC GTKEYKLLMD QFHHVSAAFL KLEKGYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YAAGLVGLGL SKIFIASELE ILTPDWKQIS
201: NSTGLFLQKT NIIKDYLEDI NERPKSRMFW PREIWGKYVD KLEDFKNEEK ATKAVQCLNE MVTNALNHVE DCLKSLASLR DPAIFQSCAI PQIVAIGTLA
301: LCYNNVQVFR GVVRLRRGLI AKVIDRTKTM DDVYGAFYDF SCMLQTKVDN NDPNAMKTLN RLETIKKFCK ENGGLHKRKS YVNDETQSKA IFVVMFVLLL
401: AIVVVYLKAN QCK

Arabidopsis Description

SQS2Inactive squalene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65688]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.