Factsheet for GSMUA_Achr2P12480_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	20.17	85.84
GSMUA_Achr4P17290_001	Banana	cytosol	49.9	81.91
EER93257	Sorghum	cytosol	62.37	74.44
Os03t0805100-01	Rice	cytosol	62.16	74.19
Zm00001d013048_P005	Maize	cytosol	61.33	73.57
TraesCS5D01G465000.1	Wheat	cytosol	61.33	73.02
TraesCS5B01G464600.1	Wheat	cytosol	61.33	73.02
TraesCS5A01G454500.1	Wheat	cytosol	61.33	73.02
VIT_03s0038g00450.t01	Wine grape	cytosol	60.08	69.98
Zm00001d034516_P001	Maize	cytosol	61.75	69.88
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	59.46	69.59
Os07t0200700-01	Rice	cytosol	59.25	69.51
CDX75450	Canola	cytosol	55.72	67.34
Bra011548.1-P	Field mustard	cytosol	55.72	67.34
CDX69075	Canola	cytosol	55.51	67.09
AT4G34640.1	Thale cress	cytosol	56.76	66.59
CDX76294	Canola	cytosol	55.09	66.25
PGSC0003DMT400008770	Potato	cytosol	55.93	65.45
CDY17472	Canola	cytosol	56.96	64.32
Bra017668.1-P	Field mustard	cytosol	32.43	64.2
PGSC0003DMT400021134	Potato	cytosol, extracellular, peroxisome	7.07	64.15
CDX75451	Canola	cytosol	54.89	63.92
Bra017667.1-P	Field mustard	cytosol	51.35	63.82
CDY45322	Canola	cytosol	53.85	63.64
Bra011549.1-P	Field mustard	cytosol	55.3	63.64
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	54.47	63.44
CDX72493	Canola	cytosol	55.93	63.15
PGSC0003DMT400089434	Potato	cytosol	49.9	62.83
CDX69076	Canola	cytosol, plasma membrane, plastid	55.51	62.38
Solyc10g054130.1.1	Tomato	unclear	55.93	61.7
CDY45323	Canola	cytosol	27.86	61.47
Solyc10g079040.1.1	Tomato	cytosol	39.5	61.29
Bra034641.1-P	Field mustard	cytosol	56.13	61.22
CDX72494	Canola	cytosol	49.9	60.76
HORVU5Hr1G109300.4	Barley	mitochondrion	62.16	58.06
TraesCS5D01G032600.1	Wheat	cytosol	21.21	57.63
KRH58230	Soybean	mitochondrion	9.56	57.5
Solyc10g079060.1.1	Tomato	cytosol	49.69	55.97

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152
GO:GO:0008610	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016765	GO:GO:0051996	EnsemblPlantsGene:GSMUA_Achr2G12480_001	EnsemblPlants:GSMUA_Achr2P12480_001	EnsemblPlants:GSMUA_Achr2T12480_001	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	UniProt:M0S7D9	PFAM:PF00494	ScanProsite:PS01044	ScanProsite:PS01045	PANTHER:PTHR11626
SUPFAM:SSF48576	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like	InterPro:Squalene/phytoene_synthase_CS	TIGRFAMs:TIGR01559	TMHMM:TMhelix
InterPro:Trans_IPPS_HH	UniParc:UPI000296E7DD	SEG:seg	:	:	:

Description

Squalene synthase [Source:GMGC_GENE;Acc:GSMUA_Achr2G12480_001]

Coordinates

chr2:-:14935496..14950278

Molecular Weight (calculated)

55217.6 Da

IEP (calculated)

7.697

GRAVY (calculated)

0.054

Length

481 amino acids

Sequence
(BLAST)

001: MYLLLFLIQS KVQLVPFFSL IHSFIFRHER TSGMCWLRTI MLPIVLFASG CVFHPLMVSC RHCLWLERER EREMGMLAAM VTHPDEVYPM VKLKLASDRI
101: RRQIPAEPHW SFSYSMLQKV SRSFALVIQQ LEPQLRDAVC VFYLVLRALD TVEDDTSIPS DIKVPILQNF YLHIYDRKWH FSCGAKDYKI LMDKFHLVST
201: AFLELDKSYQ EAIEDITRRM GAGMAKFICK EVESIDDYDE YCHYVAGLVG LGLSKLFHAS GSEELASDNL SNSMGLFLQK TNIIRDYLED INEIPKSRMF
301: WPRQIWSKYA DKLEGFKNAG NSTKAVECLN DLVTNALIHA EDCLQYMSAL KDLAIFRFCA IPQIMAIGTL ALCYNNVEVF RGVVKMRRGL TAKIIDQTNS
401: MSDVYGAFYE FSSLLKSKID DNDPNAKLTR KHVEAIQKAC GSSGLLDTRG LRMHESNRHT SLLIMVVFLL LALLLSFLSH K

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.