Factsheet for Solyc10g079060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34640.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT4G34640.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G34640.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089434	Potato	cytosol	85.25	95.29
Solyc10g079040.1.1	Tomato	cytosol	59.02	81.29
Solyc01g110290.2.1	Tomato	cytosol, nucleus, unclear	63.93	66.42
KRH24387	Soybean	cytosol	62.3	64.41
KRH29364	Soybean	endoplasmic reticulum, mitochondrion	62.06	64.16
VIT_03s0038g00450.t01	Wine grape	cytosol	61.12	63.2
AT4G34650.1	Thale cress	cytosol, nucleus, plasma membrane	59.25	61.26
CDX75450	Canola	cytosol	56.67	60.8
Bra011548.1-P	Field mustard	cytosol	56.67	60.8
CDX76294	Canola	cytosol	56.91	60.75
CDX69075	Canola	cytosol	56.44	60.55
GSMUA_Achr4P17290_001	Banana	cytosol	41.45	60.41
Solyc10g054130.1.1	Tomato	unclear	61.36	60.09
Bra017667.1-P	Field mustard	cytosol	54.1	59.69
CDX75451	Canola	cytosol	57.61	59.56
AT4G34640.1	Thale cress	cytosol	56.67	59.02
Bra011549.1-P	Field mustard	cytosol	57.61	58.85
Os03t0805100-01	Rice	cytosol	55.04	58.31
CDY17472	Canola	cytosol	58.08	58.22
CDX72493	Canola	cytosol	57.61	57.75
Bra017668.1-P	Field mustard	cytosol	32.79	57.61
CDX69076	Canola	cytosol, plasma membrane, plastid	57.61	57.48
EER93257	Sorghum	cytosol	54.1	57.32
CDY45322	Canola	cytosol	54.33	57.0
TraesCS5D01G465000.1	Wheat	cytosol	53.86	56.93
CDX72494	Canola	cytosol	52.46	56.71
GSMUA_Achr4P17270_001	Banana	cytosol, extracellular, plastid	14.99	56.64
Zm00001d013048_P005	Maize	cytosol	53.16	56.61
TraesCS5B01G464600.1	Wheat	cytosol	53.4	56.44
TraesCS5A01G454500.1	Wheat	cytosol	53.16	56.19
Bra034641.1-P	Field mustard	cytosol	57.14	55.33
CDY45323	Canola	cytosol	27.87	54.59
Os07t0200700-01	Rice	cytosol	52.22	54.39
Zm00001d034516_P001	Maize	cytosol	53.86	54.12
GSMUA_Achr2P12480_001	Banana	endoplasmic reticulum, golgi, plasma membrane	55.97	49.69
TraesCS5D01G032600.1	Wheat	cytosol	19.44	46.89
HORVU5Hr1G109300.4	Barley	mitochondrion	53.4	44.27

Protein Annotations

KEGG:00100+2.5.1.21	KEGG:00909+2.5.1.21	Gene3D:1.10.600.10	MapMan:9.1.5.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004310	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0006629	GO:GO:0006696	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016740
GO:GO:0045338	GO:GO:0051996	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4D2E7	PFAM:PF00494
PANTHER:PTHR11626	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc10g079060.1	EnsemblPlants:Solyc10g079060.1.1	InterPro:Squ/phyt_synthse	InterPro:Squal_synth-like
TIGRFAMs:TIGR01559	TMHMM:TMhelix	InterPro:Trans_IPPS_HH	UniParc:UPI000276A581	:	:

Description

No Description!

Coordinates

chr10:-:60686780..60690351

Molecular Weight (calculated)

49776.7 Da

IEP (calculated)

6.584

GRAVY (calculated)

0.038

Length

427 amino acids

Sequence
(BLAST)

001: MGFMQEILMH PDELYPLIKL MLSVKRVENK TSVWLLQPHW AFCYATLRKV SRSFALVIQQ LPSDLRNVVC VYYLVLRALD TVEDDTSLAI EVRVPILRNF
101: YCNFYDPQWN FSCGTKAFKV LMDQFHHVST AFLELDTNYQ EVIKDITKRM GEGMAKFLCK EVETIDDYNE YSFYASGLCG LGLSKFFYVS GREDLAPESI
201: SISMGLFLQK ISIIRDYLED INEVPKCRMF WPRQIWSKYV NKLEDFKYEE NSVMAVQCLN EMVTNALLYV EDCLTGMSSL RNPAIFHFCA IPQIINMGNL
301: SMYYNNVEIF KGVVEMRRGL CAKIIDQTRT MADVYGAFYD FCCIMESKVD RDDPNATITL KRLEAILKTC RDSGTLNQRK SHTFSHQPNY NIPVLVSFFW
401: LIFIVHDLHI LYICGMSIKN NFYVFIK

Best Arabidopsis Sequence Match ( AT4G34640.1 )
(BLAST)

001: MGSLGTMLRY PDDIYPLLKM KRAIEKAEKQ IPPEPHWGFC YSMLHKVSRS FSLVIQQLNT ELRNAVCVFY LVLRALDTVE DDTSIPTDEK VPILIAFHRH
101: IYDTDWHYSC GTKEYKILMD QFHHVSAAFL ELEKGYQEAI EEITRRMGAG MAKFICQEVE TVDDYDEYCH YVAGLVGLGL SKLFLAAGSE VLTPDWEAIS
201: NSMGLFLQKT NIIRDYLEDI NEIPKSRMFW PREIWGKYAD KLEDLKYEEN TNKSVQCLNE MVTNALMHIE DCLKYMVSLR DPSIFRFCAI PQIMAIGTLA
301: LCYNNEQVFR GVVKLRRGLT AKVIDRTKTM ADVYGAFYDF SCMLKTKVDK NDPNASKTLN RLEAVQKLCR DAGVLQNRKS YVNDKGQPNS VFIIMVVILL
401: AIVFAYLRAN

Arabidopsis Description

SQS1Squalene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P53799]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.