Factsheet for Solyc02g071920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006950.2.1
Solyc01g009310.2.1
Solyc01g010650.2.1
Solyc01g058280.2.1
Solyc01g088550.2.1
Solyc01g094690.2.1
Solyc01g096240.2.1
Solyc01g098040.2.1
Solyc01g103580.2.1
Solyc01g105540.2.1
Solyc01g107150.2.1
Solyc01g109310.2.1
Solyc01g109320.2.1
Solyc01g111620.2.1
Solyc01g111660.2.1
Solyc02g078010.2.1
Solyc02g087060.2.1
Solyc02g088130.1.1
Solyc03g093990.2.1
Solyc03g096290.2.1
Solyc03g116500.2.1
Solyc03g120750.2.1
Solyc04g005420.2.1
Solyc04g007590.1.1
Solyc04g016440.2.1
Solyc04g064610.2.1
Solyc04g064620.2.1
Solyc04g064630.2.1
Solyc04g064640.2.1
Solyc04g080940.2.1
Solyc05g007150.2.1
Solyc05g024430.2.1
Solyc05g053830.2.1
Solyc06g005350.2.1
Solyc06g053660.2.1
Solyc06g060550.2.1
Solyc06g060580.1.1
Solyc06g060590.2.1
Solyc06g060760.2.1
Solyc06g064800.1.1
Solyc06g065400.2.1
Solyc06g068040.2.1
Solyc06g073270.2.1
Solyc06g074090.2.1
Solyc06g075190.1.1
Solyc07g041770.1.1
Solyc07g049730.2.1
Solyc07g052380.2.1
Solyc07g054140.2.1
Solyc08g005980.2.1
Solyc08g006000.2.1
Solyc08g007510.2.1
Solyc08g008050.2.1
Solyc08g074400.1.1
Solyc08g077300.2.1
Solyc08g080500.2.1
Solyc08g081190.2.1
Solyc09g075850.2.1
Solyc09g089630.2.1
Solyc09g092680.2.1
Solyc10g051130.1.1
Solyc10g079260.1.1
Solyc10g081850.1.1
Solyc10g084120.1.1
Solyc11g005000.1.1
Solyc11g006870.1.1
Solyc11g012930.1.1
Solyc11g013100.1.1
Solyc11g018620.1.1
Solyc11g031950.1.1
Solyc11g073050.1.1
Solyc12g005850.1.1
Solyc12g056220.1.1
Solyc12g096340.1.1
Solyc12g099960.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19030.1	Solyc06g053660.2.1	AT1G04340.1	21798944
AT4G19030.1	Solyc06g073270.2.1	AT1G09330.1	21798944
AT4G19030.1	Solyc01g010650.2.1	AT1G14360.1	21798944
AT4G19030.1	Solyc05g007150.2.1	AT1G14360.1	21798944
AT4G19030.1	Solyc12g099960.1.1	AT1G16790.1	21798944
AT4G19030.1	Solyc04g064610.2.1	AT1G21460.1	21798944
AT4G19030.1	Solyc04g064620.2.1	AT1G21460.1	21798944
AT4G19030.1	Solyc04g064630.2.1	AT1G21460.1	21798944
AT4G19030.1	Solyc04g064640.2.1	AT1G21460.1	21798944
AT4G19030.1	Solyc06g060580.1.1	AT1G21460.1	21798944
AT4G19030.1	Solyc06g060590.2.1	AT1G21460.1	21798944
AT4G19030.1	Solyc02g078010.2.1	AT1G28250.1	21798944
AT4G19030.1	Solyc06g064800.1.1	AT1G33800.1	21798944
AT4G19030.1	Solyc11g031950.1.1	AT1G33800.1	21798944
AT4G19030.1	Solyc01g088550.2.1	AT1G44750.1	21798944
AT4G19030.1	Solyc11g012930.1.1	AT1G44800.1	21798944
AT4G19030.1	Solyc01g109310.2.1	AT1G47530.1	21798944
AT4G19030.1	Solyc01g109320.2.1	AT1G47530.1	21798944
AT4G19030.1	Solyc10g051130.1.1	AT1G47530.1	21798944
AT4G19030.1	Solyc01g009310.2.1	AT1G50430.1	21798944
AT4G19030.1	Solyc06g074090.2.1	AT1G50430.1	21798944
AT4G19030.1	Solyc03g120750.2.1	AT1G52280.1	21798944
AT4G19030.1	Solyc06g060550.2.1	AT1G62880.1	21798944
AT4G19030.1	Solyc08g007510.2.1	AT1G62880.1	21798944
AT4G19030.1	Solyc08g080500.2.1	AT1G63120.1	21798944
AT4G19030.1	Solyc04g080940.2.1	AT1G75500.1	21798944
AT4G19030.1	Solyc11g005000.1.1	AT1G77350.1	21798944
AT4G19030.1	Solyc03g116500.2.1	AT1G80170.1	21798944
AT4G19030.1	Solyc06g068040.2.1	AT1G80170.1	21798944
AT4G19030.1	Solyc01g010650.2.1	AT2G02810.1	21798944
AT4G19030.1	Solyc05g007150.2.1	AT2G02810.1	21798944
AT4G19030.1	Solyc04g005420.2.1	AT2G03505.1	21798944
AT4G19030.1	Solyc01g107150.2.1	AT2G14835.2	21798944
AT4G19030.1	Solyc01g111620.2.1	AT2G16800.1	21798944
AT4G19030.1	Solyc08g005980.2.1	AT2G16800.1	21798944
AT4G19030.1	Solyc07g049730.2.1	AT2G32580.1	21798944
AT4G19030.1	Solyc10g084120.1.1	AT2G37180.1	21798944
AT4G19030.1	Solyc01g098040.2.1	AT3G05100.1	21798944
AT4G19030.1	Solyc01g006950.2.1	AT3G11820.1	21798944
AT4G19030.1	Solyc10g081850.1.1	AT3G11820.1	21798944
AT4G19030.1	Solyc07g052380.2.1	AT3G21690.1	21798944
AT4G19030.1	Solyc12g005850.1.1	AT3G21690.1	21798944
AT4G19030.1	Solyc02g087060.2.1	AT3G28050.1	21798944
AT4G19030.1	Solyc02g088130.1.1	AT3G29034.1	21798944
AT4G19030.1	Solyc07g041770.1.1	AT3G42725.1	21798944
AT4G19030.1	Solyc06g005350.2.1	AT3G46060.1	21798944
AT4G19030.1	Solyc11g073050.1.1	AT3G46060.1	21798944
AT4G19030.1	Solyc04g016440.2.1	AT3G57280.1	21798944
AT4G19030.1	Solyc10g079260.1.1	AT3G57280.1	21798944
AT4G19030.1	Solyc01g096240.2.1	AT3G61870.1	21798944
AT4G19030.1	Solyc04g007590.1.1	AT4G01430.1	21798944
AT4G19030.1	Solyc11g013100.1.1	AT4G08230.1	21798944
AT4G19030.1	Solyc06g065400.2.1	AT4G09580.1	21798944
AT4G19030.1	Solyc11g018620.1.1	AT4G09580.1	21798944
AT4G19030.1	Solyc05g024430.2.1	AT4G13500.1	21798944
AT4G19030.1	Solyc05g053830.2.1	AT4G14160.1	21798944
AT4G19030.1	Solyc09g092680.2.1	AT4G14160.1	21798944
AT4G19030.1	Solyc09g089630.2.1	AT4G14455.1	21798944
AT4G19030.1	Solyc09g075850.2.1	AT4G14950.1	21798944
AT4G19030.1	Solyc06g060760.2.1	AT4G17340.1	21798944
AT4G19030.1	Solyc01g094690.2.1	AT4G23400.1	21798944
AT4G19030.1	Solyc03g096290.2.1	AT4G23400.1	21798944
AT4G19030.1	Solyc08g008050.2.1	AT4G23400.1	21798944
AT4G19030.1	Solyc08g081190.2.1	AT4G23400.1	21798944
AT4G19030.1	Solyc12g056220.1.1	AT4G23400.1	21798944
AT4G19030.1	Solyc01g103580.2.1	AT4G24310.1	21798944
AT4G19030.1	Solyc08g006000.2.1	AT4G31130.1	21798944
AT4G19030.1	Solyc08g074400.1.1	AT4G31130.1	21798944
AT4G19030.1	Solyc12g096340.1.1	AT4G31600.1	21798944
AT4G19030.1	Solyc01g111660.2.1	AT4G35100.1	21798944
AT4G19030.1	Solyc07g054140.2.1	AT5G05760.1	21798944
AT4G19030.1	Solyc06g075190.1.1	AT5G18150.1	21798944
AT4G19030.1	Solyc11g006870.1.1	AT5G19570.1	21798944
AT4G19030.1	Solyc08g077300.2.1	AT5G26667.1	21798944
AT4G19030.1	Solyc06g053660.2.1	AT5G43460.1	21798944
AT4G19030.1	Solyc01g058280.2.1	AT5G49540.1	21798944
AT4G19030.1	Solyc03g093990.2.1	AT5G51150.1	21798944
AT4G19030.1	Solyc01g105540.2.1	AT5G64290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073246	Potato	plasma membrane	96.9	96.9
Solyc03g005980.2.1	Tomato	plasma membrane	78.28	81.95
VIT_10s0003g01830.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	74.48	76.6
KRH11076	Soybean	cytosol	65.17	69.23
KRH21197	Soybean	cytosol, peroxisome, plasma membrane	64.83	68.86
KRH59036	Soybean	plasma membrane	62.41	67.04
KRH42926	Soybean	plasma membrane	61.38	64.96
Bra012567.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.86	64.09
CDX98596	Canola	cytosol, peroxisome, plasma membrane	65.86	64.09
CDY01565	Canola	cytosol, peroxisome, plasma membrane	65.86	64.09
CDX78905	Canola	cytosol, peroxisome, plasma membrane	65.52	63.97
KRH59035	Soybean	plasma membrane	59.66	63.84
Bra013361.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.83	63.3
AT4G18910.1	Thale cress	golgi, peroxisome, vacuole	64.14	63.27
CDX99411	Canola	cytosol, peroxisome, plasma membrane	64.14	62.63
KRH42923	Soybean	extracellular	57.59	61.62
AT4G19030.1	Thale cress	plasma membrane	60.69	59.46
Solyc05g008080.1.1	Tomato	plasma membrane	55.52	59.19
Solyc02g091420.2.1	Tomato	plasma membrane	54.48	59.18
KRH45251	Soybean	extracellular	18.28	58.24
Solyc06g073590.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	55.52	46.67
Solyc02g063310.2.1	Tomato	cytosol, extracellular, vacuole	21.38	45.26
Solyc02g071910.1.1	Tomato	endoplasmic reticulum, extracellular	34.14	42.86
Solyc12g057050.1.1	Tomato	extracellular, peroxisome, vacuole	38.28	42.69
Solyc03g013340.2.1	Tomato	cytosol	40.69	41.7
Solyc08g013730.2.1	Tomato	cytosol, plasma membrane, plastid	40.34	39.66
Solyc03g117050.2.1	Tomato	plasma membrane	38.97	36.93
HORVU7Hr1G088900.1	Barley	cytosol, golgi, plasma membrane	25.17	34.6
Solyc01g079890.2.1	Tomato	plasma membrane	32.41	33.1
GSMUA_Achr4P10230_001	Banana	plastid	23.79	21.97

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	EMBL:AB845626	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	UniProt:K4B8G7	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF189	SUPFAM:SSF81338
EnsemblPlantsGene:Solyc02g071920.2	EnsemblPlants:Solyc02g071920.2.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00027691E2	SEG:seg

Description

Nodulin26-like intrinsic protein 12 [Source:UniProtKB/TrEMBL;Acc:K4B8G7]

Coordinates

chr2:-:41279766..41283576

Molecular Weight (calculated)

30622.1 Da

IEP (calculated)

9.373

GRAVY (calculated)

0.373

Length

290 amino acids

Sequence
(BLAST)

001: MGDQQIGGGA NGSISLNIRD ADDNLNNKNC ANSVSHQDSS SNSTCSFVTV PFIQKIIAET LGTYFLIFAG CGSVAVNADK GMVTFPGISI VWGLVVMVMV
101: YSVGHISGAH FNPAVTIAFA SNKRFPWKQV PAYVAAQVIG STLASGTLRL IFNGKHDHFV GTSPTGSDVQ SLVLEFIITF YLMFVISGVA TDNRAIGELA
201: GLAVGATVLL NVMFAGPISG ASMNPARSLG PAIVSSHYKG LWVYMLGPIG GAIAGAWVYN IIRFTDKPLR EITKSGSFLK SKTLLRNPSH

Best Arabidopsis Sequence Match ( AT4G18910.1 )
(BLAST)

001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR

Arabidopsis Description

NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.