Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- vacuole 3
- mitochondrion 1
- extracellular 4
- plasma membrane 3
- endoplasmic reticulum 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001638 | Potato | extracellular, plastid | 94.69 | 95.32 |
| Solyc06g068040.2.1 | Tomato | nucleus | 60.62 | 62.7 |
| VIT_09s0002g06380.t01 | Wine grape | cytosol | 50.88 | 55.56 |
| CDY54312 | Canola | extracellular | 52.43 | 53.38 |
| AT1G80170.1 | Thale cress | extracellular | 52.43 | 53.38 |
| Bra003555.1-P | Field mustard | extracellular | 51.99 | 52.57 |
| CDY57689 | Canola | extracellular | 51.99 | 52.57 |
| KRH09752 | Soybean | extracellular | 51.77 | 51.09 |
| GSMUA_Achr3P13670_001 | Banana | extracellular | 50.0 | 49.67 |
| EES18597 | Sorghum | extracellular | 40.93 | 45.34 |
| Os05t0542800-02 | Rice | extracellular | 42.7 | 45.31 |
| Zm00001d038874_P002 | Maize | extracellular | 40.93 | 44.9 |
| TraesCS1D01G370300.3 | Wheat | extracellular | 40.71 | 44.77 |
| TraesCS1B01G382200.2 | Wheat | extracellular | 40.71 | 44.44 |
| TraesCS1A01G364800.2 | Wheat | extracellular | 40.27 | 43.96 |
| Solyc04g015530.1.1 | Tomato | cytosol | 37.39 | 43.11 |
| Solyc08g060970.2.1 | Tomato | nucleus | 37.17 | 42.32 |
| Solyc09g098270.2.1 | Tomato | cytosol | 39.82 | 41.57 |
| Solyc04g025440.2.1 | Tomato | extracellular | 42.04 | 41.3 |
| TraesCS1D01G370700.1 | Wheat | extracellular | 37.39 | 40.33 |
| TraesCS1B01G382700.1 | Wheat | extracellular | 36.95 | 39.86 |
| TraesCS1B01G382800.1 | Wheat | extracellular | 37.83 | 39.4 |
| TraesCS1D01G370800.1 | Wheat | extracellular | 37.83 | 39.4 |
| HORVU1Hr1G079130.2 | Barley | extracellular | 37.83 | 39.4 |
| TraesCS1A01G365300.1 | Wheat | extracellular | 37.83 | 39.31 |
| HORVU3Hr1G006180.2 | Barley | extracellular | 37.39 | 39.3 |
| TraesCS3B01G020300.1 | Wheat | extracellular | 38.5 | 39.28 |
| Os05t0542900-01 | Rice | extracellular | 38.5 | 39.1 |
| Solyc12g009420.1.1 | Tomato | extracellular | 35.18 | 39.07 |
| Solyc10g080210.1.1 | Tomato | extracellular | 39.38 | 38.95 |
| Solyc01g087280.1.1 | Tomato | extracellular | 36.5 | 38.82 |
| TraesCS3A01G024500.1 | Wheat | extracellular | 37.83 | 38.69 |
| TraesCS3D01G021700.1 | Wheat | extracellular | 36.95 | 37.87 |
| Solyc01g079130.1.1 | Tomato | extracellular | 38.94 | 37.29 |
| TraesCS1A01G365200.1 | Wheat | extracellular | 37.39 | 36.82 |
| Zm00001d038875_P001 | Maize | extracellular | 38.27 | 36.73 |
| Solyc07g015870.2.1 | Tomato | extracellular | 36.06 | 36.3 |
| KXG22449 | Sorghum | extracellular, golgi | 37.39 | 36.11 |
| Solyc03g116580.2.1 | Tomato | extracellular | 34.07 | 35.24 |
| HORVU1Hr1G079140.6 | Barley | plastid | 37.83 | 34.97 |
| Solyc01g100980.2.1 | Tomato | extracellular | 36.73 | 34.87 |
| Solyc03g113230.1.1 | Tomato | extracellular | 31.42 | 34.55 |
| Solyc05g005170.2.1 | Tomato | nucleus | 38.27 | 34.06 |
| Solyc04g008230.2.1 | Tomato | nucleus | 36.06 | 33.27 |
| Solyc05g005040.2.1 | Tomato | extracellular | 34.29 | 32.91 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EMBL:AF138858 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF91 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | UniProt:Q9M7D3 | SMART:SM00710 | SUPFAM:SSF51126 | EnsemblPlantsGene:Solyc03g116500.2 | EnsemblPlants:Solyc03g116500.2.1 |
| TMHMM:TMhelix | UniParc:UPI00000A2D9B | SEG:seg | : | : | : |
Description
Polygalacturonase [Source:UniProtKB/TrEMBL;Acc:Q9M7D3]
Coordinates
chr3:+:65900461..65904769
Molecular Weight (calculated)
49440.9 Da
IEP (calculated)
8.614
GRAVY (calculated)
-0.113
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKMASSSIS SFNFSSYSKS VALFLSLYSL YFLLISANVS GFESLLQLLP ASASLRTKSE SLFRVNDFGA TGDGITDDTK SFKDVWDMAC SSPSHAKIVI
101: PAGYSFLVRQ INFAGPCRSK VSIRIAGTIL APKDPDVWDD LNPRKWIYFF KVKHLTVEGG GIIDGMGQEW WARSCKVNRT NPCHHAPTAL TFHKCNNLKV
201: KNIKIFNSQQ MHLAFTGCKH VTISQLVVKA PGDSPNTDAI HISSSTQVNV KDCIIGTGDD CISIVGNSSR IKVKDIVCGP GHGISIGSLG KSNSFSQVYN
301: VHVNGASISN TENGVRIKTW QGGSGFVKKV SFENVWMENV SNPIIIDQYY CDSRKPCSNK TSNIHIDNIS FMGIKGTSAT ERAITLACSD SFPCRRLYLE
401: DIQLTSSSGD PTTFFCWQAY GTTSGLNYPP PCFPCNDGIL QPKFLSNWSQ SI
101: PAGYSFLVRQ INFAGPCRSK VSIRIAGTIL APKDPDVWDD LNPRKWIYFF KVKHLTVEGG GIIDGMGQEW WARSCKVNRT NPCHHAPTAL TFHKCNNLKV
201: KNIKIFNSQQ MHLAFTGCKH VTISQLVVKA PGDSPNTDAI HISSSTQVNV KDCIIGTGDD CISIVGNSSR IKVKDIVCGP GHGISIGSLG KSNSFSQVYN
301: VHVNGASISN TENGVRIKTW QGGSGFVKKV SFENVWMENV SNPIIIDQYY CDSRKPCSNK TSNIHIDNIS FMGIKGTSAT ERAITLACSD SFPCRRLYLE
401: DIQLTSSSGD PTTFFCWQAY GTTSGLNYPP PCFPCNDGIL QPKFLSNWSQ SI
001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL
Arabidopsis Description
Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.