Factsheet for TraesCS1A01G365200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G370700.1	Wheat	extracellular	88.45	96.9
TraesCS1B01G382700.1	Wheat	extracellular	88.02	96.42
HORVU1Hr1G079140.6	Barley	plastid	84.75	79.55
TraesCS1A01G365300.1	Wheat	extracellular	53.59	56.55
TraesCS3A01G024500.1	Wheat	extracellular	53.38	55.43
TraesCS1A01G364800.2	Wheat	extracellular	46.84	51.93
VIT_09s0002g06380.t01	Wine grape	cytosol	35.29	39.13
GSMUA_Achr3P13670_001	Banana	extracellular	38.56	38.9
CDY54312	Canola	extracellular	37.25	38.51
PGSC0003DMT400001638	Potato	extracellular, plastid	37.25	38.08
CDY57689	Canola	extracellular	37.04	38.03
Bra003555.1-P	Field mustard	extracellular	36.82	37.81
Solyc03g116500.2.1	Tomato	nucleus	36.82	37.39
AT1G80170.1	Thale cress	extracellular	35.51	36.71
KRH09752	Soybean	extracellular	36.6	36.68
Solyc06g068040.2.1	Tomato	nucleus	34.86	36.61
TraesCS5A01G459100.1	Wheat	extracellular	32.9	36.3
TraesCS2A01G405600.1	Wheat	extracellular	24.84	35.74
TraesCS7A01G162500.1	Wheat	extracellular	32.03	35.0
TraesCS5A01G459000.1	Wheat	extracellular	31.15	34.96
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	30.5	34.57
TraesCS2A01G405100.1	Wheat	extracellular	30.72	33.81
TraesCS1A01G124300.1	Wheat	extracellular, plastid	30.94	32.79
TraesCS4A01G066700.1	Wheat	extracellular	30.94	32.79
TraesCS3A01G129500.1	Wheat	extracellular	28.98	32.68
TraesCS3A01G129400.1	Wheat	extracellular	28.1	31.46
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	34.86	30.48
TraesCS1A01G311100.1	Wheat	extracellular	31.59	29.96
TraesCS7A01G330000.1	Wheat	extracellular	30.28	28.48
TraesCS1A01G418000.1	Wheat	extracellular	29.41	26.47
TraesCS3A01G225800.2	Wheat	extracellular	30.07	25.6

Protein Annotations

EnsemblPlants:TraesCS1A01G365200.1	EnsemblPlantsGene:TraesCS1A01G365200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375
PANTHER:PTHR31375:SF4	PFAM:PF00295	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51126	TMHMM:TMhelix
MapMan:50.3.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:544487014..544489022

Molecular Weight (calculated)

48578.0 Da

IEP (calculated)

7.269

GRAVY (calculated)

-0.004

Length

459 amino acids

Sequence
(BLAST)

001: MATAMALLRL AVLAGAVALL LPAVAEARIL LSLDDFGAVG DGIADDTQAL VDAWTAACAS TNGHVVIHVP AGRSYQIWPV TLAGPCRDEI MIFVRSFLPA
101: CLPPRALLSS GMHAPARLRS SSLGLCPCPV GQVSGNIIAP DSPEDWERRD GGKWLHFFQV QDLTVSGGGV IDGRGQEWWA QACKGRHRND KHCTAPDAPK
201: ALHFEECHGV RVQGVTLQNG QQHHLTFTRC SNARASFLRV ASPESSPGTD GIHLVNSISV HVNDVHIATG GACVSMVGNC TDVRLRYVSC GPGNGISIGS
301: IGETPVADRL EKIEVDTMFI ANTSNGLLIK TWQDGCGYAR KVKFANVVMK NVSDPIIIDQ YRSEHPTPCG STAATRTVAV EKIDYVNIAG TSASKRAVTF
401: SCSDVVPCRQ VSLKDVNLKR LSGRGASAYC RSASGKAAGV VVPESCLDGT RGAAGDEEE

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.