Factsheet for Bra003555.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57689	Canola	extracellular	98.21	98.21
CDY54312	Canola	extracellular	96.42	97.07
AT1G80170.1	Thale cress	extracellular	84.34	84.91
KRH09752	Soybean	extracellular	54.36	53.06
VIT_09s0002g06380.t01	Wine grape	cytosol	48.77	52.66
PGSC0003DMT400001638	Potato	extracellular, plastid	52.8	52.56
GSMUA_Achr3P13670_001	Banana	extracellular	53.24	52.31
Solyc03g116500.2.1	Tomato	nucleus	52.57	51.99
Solyc06g068040.2.1	Tomato	nucleus	49.89	51.03
Zm00001d038874_P002	Maize	extracellular	42.28	45.87
EES18597	Sorghum	extracellular	41.83	45.83
TraesCS1B01G382200.2	Wheat	extracellular	41.16	44.44
TraesCS1A01G364800.2	Wheat	extracellular	41.16	44.44
Os05t0542800-02	Rice	extracellular	42.28	44.37
TraesCS1D01G370300.3	Wheat	extracellular	40.27	43.8
Bra016911.1-P	Field mustard	extracellular	42.06	43.42
Bra004655.1-P	Field mustard	extracellular	40.49	42.29
Bra016213.1-P	Field mustard	extracellular	43.4	41.54
Bra029690.1-P	Field mustard	cytosol	37.14	40.89
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	40.94	40.85
TraesCS1D01G370700.1	Wheat	extracellular	37.81	40.33
TraesCS1B01G382700.1	Wheat	extracellular	37.58	40.1
Bra007332.1-P	Field mustard	extracellular	38.7	40.05
Bra024602.1-P	Field mustard	cytosol	39.6	40.05
Bra027926.1-P	Field mustard	extracellular	38.93	40.0
Bra012375.1-P	Field mustard	cytosol	39.6	39.69
Bra003286.1-P	Field mustard	extracellular	37.81	39.03
Bra016345.1-P	Field mustard	extracellular	40.72	38.89
Bra025099.1-P	Field mustard	extracellular	34.45	38.5
Bra001279.1-P	Field mustard	extracellular	37.58	38.44
TraesCS1B01G382800.1	Wheat	extracellular	36.91	38.02
TraesCS1D01G370800.1	Wheat	extracellular	36.91	38.02
Bra008748.1-P	Field mustard	extracellular	37.14	37.81
TraesCS3A01G024500.1	Wheat	extracellular	37.36	37.78
Os05t0542900-01	Rice	extracellular	37.36	37.53
TraesCS3B01G020300.1	Wheat	extracellular	37.14	37.47
HORVU1Hr1G079130.2	Barley	extracellular	36.24	37.33
TraesCS1A01G365300.1	Wheat	extracellular	36.24	37.24
Bra025103.1-P	Field mustard	extracellular	33.11	37.0
TraesCS1A01G365200.1	Wheat	extracellular	37.81	36.82
TraesCS3D01G021700.1	Wheat	extracellular	36.02	36.51
HORVU3Hr1G006180.2	Barley	extracellular	34.9	36.28
Bra025631.1-P	Field mustard	extracellular	33.33	35.31
Bra018707.1-P	Field mustard	extracellular	37.14	35.17
Bra033328.1-P	Field mustard	extracellular	38.48	35.03
Bra032600.1-P	Field mustard	extracellular	38.48	35.03
Zm00001d038875_P001	Maize	extracellular	36.69	34.82
KXG22449	Sorghum	extracellular, golgi	36.24	34.62
Bra000911.1-P	Field mustard	extracellular, vacuole	36.91	33.95
HORVU1Hr1G079140.6	Barley	plastid	37.14	33.95
Bra008493.1-P	Field mustard	extracellular	29.53	33.85
Bra023600.1-P	Field mustard	extracellular	31.99	33.41
Bra011341.1-P	Field mustard	cytosol	29.31	33.33
Bra031724.1-P	Field mustard	extracellular	37.58	32.62
Bra025216.1-P	Field mustard	extracellular	34.23	32.55
Bra001605.1-P	Field mustard	extracellular	32.44	32.08
Bra008572.1-P	Field mustard	extracellular	31.1	32.03
Bra027211.1-P	Field mustard	extracellular	32.21	31.93
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	37.81	31.71
Bra027210.1-P	Field mustard	extracellular	32.21	31.58
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	36.91	31.07
Bra027148.1-P	Field mustard	extracellular	36.47	30.41
Bra040077.1-P	Field mustard	extracellular	22.82	27.95

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra003555	EnsemblPlants:Bra003555.1	EnsemblPlants:Bra003555.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CH72	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF91	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00025419DA	SEG:seg	:	:	:	:

Description

AT1G80170 (E=2e-185) | polygalacturonase, putative / pectinase, putative

Coordinates

chrA07:-:13758054..13760159

Molecular Weight (calculated)

48616.7 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.199

Length

447 amino acids

Sequence
(BLAST)

001: MSYLCSIVVT RLLLLVVFSL SLTASNANSF ESLLQLPRRP PRSTRTRPRS ERLIHVGHFG AKGNGFTDDT KAFEDAWKTA CSSKGKTRVL VPENYTSLVR
101: PIDLSGPCKA RLTLQISGTI IAPDDPDAWE GLNPRKWLYF HSVSRFTVEG GGTVNGMGQE WWRRSCKHNH SNPCRGAPTA LTFHKCKNMR VENLSVIDSQ
201: QMHIAFTSCR RVTVSALKVI APGTSPNTDG IHISASRSIV VDNSTVSTGD DCVSIVKNSS QISISNIICG PGHGISIGSI GKSKSWEEVK DVTVDTAFIS
301: DTANGVRIKT WQGGSGLVSK IIFRNINMNN VSNPIIIDQY YCDSKKPCAN QTSAVSLEKI SFANVHGTSA TKQAIKISCS DAMPCRDIVL QDIDLEPSKG
401: DGYTESFCWE AYGSSSGQVY PPSCLSGDES FLEQSVRSGI ITSVSYI

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.