Factsheet for Bra001279.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74019	Canola	extracellular	98.17	98.17
Bra029690.1-P	Field mustard	cytosol	76.2	82.02
AT3G07970.1	Thale cress	extracellular	79.63	79.27
VIT_13s0064g00760.t01	Wine grape	cytosol	44.39	58.43
KRH23942	Soybean	extracellular	54.0	53.64
KRH32949	Soybean	extracellular	53.09	52.97
KRH13966	Soybean	extracellular	53.09	52.85
KRH39858	Soybean	extracellular	53.09	52.61
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	45.77	50.38
VIT_13s0064g00750.t01	Wine grape	cytosol	51.49	49.34
Bra016911.1-P	Field mustard	extracellular	47.6	48.04
Bra007332.1-P	Field mustard	extracellular	47.37	47.92
GSMUA_Achr1P22940_001	Banana	extracellular	48.28	47.85
Bra003286.1-P	Field mustard	extracellular	47.37	47.81
HORVU0Hr1G038940.1	Barley	cytosol	43.94	47.52
Solyc01g087280.1.1	Tomato	extracellular	45.77	47.06
PGSC0003DMT400017691	Potato	extracellular	37.76	47.01
Bra004655.1-P	Field mustard	extracellular	45.54	46.5
TraesCS4A01G066700.1	Wheat	extracellular	45.08	45.5
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	46.45	45.31
TraesCS4D01G243600.1	Wheat	extracellular	44.62	45.03
KXG39856	Sorghum	extracellular	44.16	44.88
TraesCS4B01G244300.1	Wheat	extracellular	44.16	44.57
Os03t0216800-01	Rice	extracellular	43.25	43.15
Zm00001d048079_P001	Maize	extracellular	43.71	41.34
Bra003555.1-P	Field mustard	extracellular	38.44	37.58
Bra012375.1-P	Field mustard	cytosol	38.22	37.44
Bra024602.1-P	Field mustard	cytosol	37.76	37.33
Bra025099.1-P	Field mustard	extracellular	33.87	37.0
Bra023600.1-P	Field mustard	extracellular	35.93	36.68
Bra016213.1-P	Field mustard	extracellular	39.13	36.62
Bra016345.1-P	Field mustard	extracellular	39.13	36.54
Bra025103.1-P	Field mustard	extracellular	33.41	36.5
Bra008748.1-P	Field mustard	extracellular	35.93	35.76
Bra011341.1-P	Field mustard	cytosol	32.04	35.62
Bra008572.1-P	Field mustard	extracellular	35.24	35.48
Bra025631.1-P	Field mustard	extracellular	34.1	35.31
Bra027926.1-P	Field mustard	extracellular	34.78	34.94
Bra001605.1-P	Field mustard	extracellular	35.93	34.73
Bra027210.1-P	Field mustard	extracellular	35.93	34.43
Bra008493.1-P	Field mustard	extracellular	30.66	34.36
Bra027211.1-P	Field mustard	extracellular	34.55	33.48
Bra018707.1-P	Field mustard	extracellular	35.24	32.63
Bra033328.1-P	Field mustard	extracellular	34.32	30.55
Bra000911.1-P	Field mustard	extracellular, vacuole	33.87	30.45
Bra025216.1-P	Field mustard	extracellular	32.72	30.43
Bra032600.1-P	Field mustard	extracellular	33.64	29.94
Bra040077.1-P	Field mustard	extracellular	24.03	28.77
Bra031724.1-P	Field mustard	extracellular	33.87	28.74
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	33.87	27.87
Bra027148.1-P	Field mustard	extracellular	34.1	27.8
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	33.41	27.39

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EnsemblPlantsGene:Bra001279	EnsemblPlants:Bra001279.1	EnsemblPlants:Bra001279.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CAQ0	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF28	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00025404DF	SEG:seg	:	:	:

Description

AT3G07970 (E=8e-203) QRT2 | QRT2 (QUARTET 2); polygalacturonase

Coordinates

chrA03:+:15625304..15627770

Molecular Weight (calculated)

48077.5 Da

IEP (calculated)

9.263

GRAVY (calculated)

-0.342

Length

437 amino acids

Sequence
(BLAST)

001: MYQKTIIFLT ILLTSLRSCS SSYPFDPRYE HSISPNVYYE TNHQHGHITH NRHMKDPHAA PRSSPRAFNV NSFGAKANGN DDSQAFMKAW EAACSSKGTA
101: YIVVPENRAY TLKPVKFSGP CKSSMIVFKI YGKIEAWKNP SDYRERGFWI VFQTVDNLRV EGGGRVDGNG KIWWPKSCKI NPELPCQEAP TAVTFVECNN
201: LMVRNIRLEN AQQMHMRVQK CENVKALNLM VKSPGDSPNT DGIHVTGTRN ILIQDSIIRT GDDCISIVSG SENVRATGIT CGPGHGISIG SLGAHNSEAY
301: VSNVVVSKAT LIGTTNGVRI KTWQGGHGMA KNIIFKDILM KNVTNPIIIN QNYCDQTKAC PEQKSAVQVS NVLYKNIHGT SSSPEAIKFV CSKSIPCQGI
401: SLQNVELVDQ NTKQDVSKAT CSNVKLKSSG RLSSLCT

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.