Factsheet for GSMUA_Achr10P08930_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 2
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00760.t01	Wine grape	cytosol	45.09	53.92
GSMUA_Achr1P22940_001	Banana	extracellular	55.92	50.34
Solyc04g015530.1.1	Tomato	cytosol	48.36	48.98
VIT_08s0007g08330.t01	Wine grape	extracellular	54.66	48.87
KRH71979	Soybean	extracellular	51.13	47.43
VIT_08s0007g07750.t01	Wine grape	extracellular	52.39	47.06
Bra029690.1-P	Field mustard	cytosol	48.11	47.04
VIT_08s0007g07760.t01	Wine grape	extracellular	51.39	46.9
Bra003286.1-P	Field mustard	extracellular	50.88	46.65
CDX67693	Canola	extracellular	50.88	46.65
VIT_08s0007g07780.t01	Wine grape	extracellular	50.88	46.54
VIT_08s0007g07770.t01	Wine grape	extracellular	51.64	46.38
KRH13966	Soybean	extracellular	51.13	46.24
CDX74019	Canola	extracellular	50.88	46.22
CDX72025	Canola	extracellular	50.13	46.06
KRH39858	Soybean	extracellular	51.13	46.03
KRH32949	Soybean	extracellular	50.63	45.89
Bra007332.1-P	Field mustard	extracellular	49.87	45.83
Bra001279.1-P	Field mustard	extracellular	50.38	45.77
KRH23942	Soybean	extracellular	50.63	45.68
Bra016911.1-P	Field mustard	extracellular	49.62	45.5
CDY07963	Canola	extracellular	50.13	45.43
CDY06902	Canola	extracellular	49.37	45.27
CDY14791	Canola	extracellular	49.37	45.27
AT3G57510.1	Thale cress	extracellular	49.12	45.24
VIT_13s0064g00750.t01	Wine grape	cytosol	51.89	45.18
CDY28005	Canola	extracellular	47.86	45.13
AT3G07970.1	Thale cress	extracellular	49.87	45.1
CDY48768	Canola	extracellular	49.37	45.06
PGSC0003DMT400017691	Potato	extracellular	39.8	45.01
CDY35976	Canola	extracellular	47.61	44.89
AT2G41850.1	Thale cress	extracellular	48.87	44.8
Solyc10g080210.1.1	Tomato	extracellular	51.39	44.64
CDX79907	Canola	extracellular	48.87	44.6
Bra004655.1-P	Field mustard	extracellular	47.61	44.16
Solyc01g087280.1.1	Tomato	extracellular	46.6	43.53
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	49.12	43.53
KRH66955	Soybean	extracellular	49.37	42.24
KRH33163	Soybean	extracellular, plastid	50.38	41.93
PGSC0003DMT400070039	Potato	cytosol	42.32	40.98
GSMUA_Achr3P13670_001	Banana	extracellular	45.09	39.34
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	37.53	39.01
GSMUA_Achr7P01870_001	Banana	cytosol	42.32	38.18
KRG95273	Soybean	extracellular	49.62	37.67
GSMUA_Achr11P...	Banana	extracellular	39.04	37.26
GSMUA_AchrUn_...	Banana	extracellular	26.95	37.15
GSMUA_Achr4P22100_001	Banana	extracellular	43.07	36.85
GSMUA_Achr8P06220_001	Banana	extracellular	43.32	36.75
GSMUA_Achr9P22320_001	Banana	extracellular	37.78	36.32
GSMUA_Achr4P13200_001	Banana	extracellular	38.29	36.02
CDY61868	Canola	extracellular	49.62	35.88
GSMUA_Achr11P...	Banana	extracellular	38.79	35.32
GSMUA_Achr8P22240_001	Banana	extracellular	39.8	33.12
CDY06100	Canola	extracellular	35.26	32.79
GSMUA_AchrUn_...	Banana	mitochondrion	33.5	32.68
GSMUA_Achr2P14330_001	Banana	extracellular	36.27	31.72
GSMUA_Achr1P12720_001	Banana	extracellular	32.24	31.22
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	38.79	30.74
GSMUA_Achr5P09080_001	Banana	extracellular	37.03	30.18
GSMUA_Achr4P02960_001	Banana	extracellular	36.02	30.11
GSMUA_Achr6P22080_001	Banana	extracellular	34.51	28.25
GSMUA_Achr3P08400_001	Banana	extracellular	38.79	27.4
GSMUA_Achr1P27280_001	Banana	extracellular	35.01	27.25
GSMUA_Achr4P06370_001	Banana	extracellular	40.55	21.35

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr10G08930_001	EnsemblPlants:GSMUA_Achr10P08930_001	EnsemblPlants:GSMUA_Achr10T08930_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0RGL9	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF28	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI0002957203	:	:	:	:	:

Description

Polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr10G08930_001]

Coordinates

chr10:-:18950350..18953323

Molecular Weight (calculated)

43044.7 Da

IEP (calculated)

9.479

GRAVY (calculated)

-0.279

Length

397 amino acids

Sequence
(BLAST)

001: MASLGGERVN NPTIMKSPSG STQKVVNVQY YGAKGDEDSD SMAFEKAWKK ACSSSTPTIL LIPKNKRYLL KPMNFRGPCK SRVSFTIMGT LEASRNQKDW
101: DGRISRHWIL FSNIDNLTVR GGGTINGNGK IWWRGSCKMD ASMPCISAPT ALSFNSCKNL RVENLKVMDS PRMHISLEKC TGVDASHLTI TAPHESPNTD
201: GIHITHSKNV KIANSFIGTG DDCISIVSGS KNVMATNIVC GPGHGISIGS LGAHNSEAQV SNVTVDTARF IGTANGVRIK TWQGGKGYAK GLTFKNIVMH
301: NVLNPIIIDQ NYCDSQNPCQ RQVSAVQVMD VLYQNIKGTS ASEVAINLQC SNDRPCRHVL LQDVNLVGVG GDSAKSLCSN VQWIKRGTVI PPPRIHD

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.