Factsheet for VIT_13s0064g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 2
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00750.t01	Wine grape	cytosol	77.11	56.14
Bra029690.1-P	Field mustard	cytosol	57.23	46.8
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	53.92	45.09
CDY07963	Canola	extracellular	58.73	44.52
Bra001279.1-P	Field mustard	extracellular	58.43	44.39
CDX74019	Canola	extracellular	58.43	44.39
PGSC0003DMT400017691	Potato	extracellular	46.69	44.16
KRH32949	Soybean	extracellular	58.13	44.06
VIT_08s0007g07750.t01	Wine grape	extracellular	58.43	43.89
KRH13966	Soybean	extracellular	57.83	43.74
VIT_08s0007g07760.t01	Wine grape	extracellular	57.23	43.68
VIT_08s0007g07770.t01	Wine grape	extracellular	58.13	43.67
AT3G07970.1	Thale cress	extracellular	57.53	43.51
VIT_08s0007g08330.t01	Wine grape	extracellular	58.13	43.47
CDY35976	Canola	extracellular	54.82	43.23
CDY28005	Canola	extracellular	54.82	43.23
VIT_08s0007g07780.t01	Wine grape	extracellular	55.42	42.4
KRH39858	Soybean	extracellular	55.72	41.95
Solyc01g087280.1.1	Tomato	extracellular	53.61	41.88
KRH23942	Soybean	extracellular	55.42	41.82
HORVU0Hr1G038940.1	Barley	cytosol	49.7	40.84
KXG39856	Sorghum	extracellular	52.11	40.23
Os03t0216800-01	Rice	extracellular	52.11	39.5
GSMUA_Achr1P22940_001	Banana	extracellular	52.11	39.23
TraesCS4A01G066700.1	Wheat	extracellular	50.0	38.34
TraesCS4D01G243600.1	Wheat	extracellular	49.7	38.11
TraesCS4B01G244300.1	Wheat	extracellular	49.7	38.11
VIT_09s0002g06380.t01	Wine grape	cytosol	45.78	36.72
Zm00001d048079_P001	Maize	extracellular	49.7	35.71
VIT_09s0002g06610.t01	Wine grape	extracellular	40.66	34.7
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	37.65	33.69
VIT_09s0002g06580.t01	Wine grape	cytosol	39.46	33.5
VIT_17s0000g05670.t01	Wine grape	extracellular	38.55	32.57
VIT_09s0002g06650.t01	Wine grape	extracellular	39.46	32.43
VIT_17s0000g05660.t01	Wine grape	extracellular	37.35	32.04
VIT_14s0060g00620.t01	Wine grape	extracellular	41.27	29.53
VIT_07s0005g02090.t01	Wine grape	extracellular	40.06	28.6
VIT_14s0066g01060.t01	Wine grape	extracellular	40.96	28.16
VIT_05s0020g00420.t01	Wine grape	extracellular	38.86	27.04
VIT_01s0127g00120.t01	Wine grape	extracellular	37.95	26.3
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	38.86	24.9

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EMBL:AM429837	ProteinID:CAN78059	ProteinID:CAN78059.1	ProteinID:CCB49516
ProteinID:CCB49516.1	UniProt:F6HBA1	EMBL:FN595509	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF28	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI000210A6EE	ArrayExpress:VIT_13s0064g00760	EnsemblPlantsGene:VIT_13s0064g00760	EnsemblPlants:VIT_13s0064g00760.t01
unigene:Vvi.5488	RefSeq:XP_003633562	RefSeq:XP_003633562.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:22516138..22529108

Molecular Weight (calculated)

36381.3 Da

IEP (calculated)

7.836

GRAVY (calculated)

-0.316

Length

332 amino acids

Sequence
(BLAST)

001: MASKAFKTAW EETCSSNTAV LVVPQNKKYH VKPITFSGPC KSDSVKLKIL GTIKASEDPS DYAKDRSRWL LFYNIKNFQV EGQGTIDGNG KIWWKNSCKI
101: NITQPCTNAP TAVSFVQCDN LKVYGLNVQD AQQMHVSFEE SMNVQASNIM VTSSEESPNT DGIHVTRSEN VQIIKTVIKT GDDCISIVNG STNIEAIDVT
201: CGPGHGISIG SLGKGKSEAR VSNVMVNTAK LIGTTNGVRI KTWQGGSGYA ENIVFQDIKM ENVSNPIIID QNYCDQETPC NEQNSAVQIR NIVYKNITGT
301: SATKMTIIFN CSKTLPCQGI VQKDINLVYK EN

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.