Factsheet for VIT_13s0064g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00760.t01	Wine grape	cytosol	56.14	77.11
VIT_08s0007g07760.t01	Wine grape	extracellular	51.54	54.02
Bra029690.1-P	Field mustard	cytosol	48.03	53.94
VIT_08s0007g07750.t01	Wine grape	extracellular	52.19	53.85
VIT_08s0007g07770.t01	Wine grape	extracellular	52.19	53.85
VIT_08s0007g07780.t01	Wine grape	extracellular	51.1	53.69
VIT_08s0007g08330.t01	Wine grape	extracellular	52.19	53.6
KRH13966	Soybean	extracellular	51.1	53.08
KRH32949	Soybean	extracellular	50.44	52.51
CDY07963	Canola	extracellular	50.22	52.28
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	45.18	51.89
CDX74019	Canola	extracellular	49.56	51.72
AT3G07970.1	Thale cress	extracellular	49.78	51.71
Bra001279.1-P	Field mustard	extracellular	49.34	51.49
PGSC0003DMT400017691	Potato	extracellular	39.47	51.28
CDY35976	Canola	extracellular	47.15	51.07
KRH23942	Soybean	extracellular	49.12	50.91
CDY28005	Canola	extracellular	46.71	50.59
KRH39858	Soybean	extracellular	48.25	49.89
Solyc01g087280.1.1	Tomato	extracellular	45.61	48.94
HORVU0Hr1G038940.1	Barley	cytosol	42.11	47.52
GSMUA_Achr1P22940_001	Banana	extracellular	45.61	47.17
KXG39856	Sorghum	extracellular	42.54	45.12
Os03t0216800-01	Rice	extracellular	43.2	44.98
TraesCS4A01G066700.1	Wheat	extracellular	42.54	44.8
TraesCS4D01G243600.1	Wheat	extracellular	42.32	44.57
TraesCS4B01G244300.1	Wheat	extracellular	42.32	44.57
VIT_09s0002g06380.t01	Wine grape	cytosol	38.16	42.03
Zm00001d048079_P001	Maize	extracellular	41.67	41.13
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	32.24	39.62
VIT_09s0002g06610.t01	Wine grape	extracellular	32.89	38.56
VIT_09s0002g06650.t01	Wine grape	extracellular	33.77	38.12
VIT_17s0000g05670.t01	Wine grape	extracellular	32.46	37.66
VIT_09s0002g06580.t01	Wine grape	cytosol	31.8	37.08
VIT_17s0000g05660.t01	Wine grape	extracellular	30.92	36.43
VIT_14s0060g00620.t01	Wine grape	extracellular	35.75	35.13
VIT_07s0005g02090.t01	Wine grape	extracellular	34.87	34.19
VIT_05s0020g00420.t01	Wine grape	extracellular	34.65	33.12
VIT_14s0066g01060.t01	Wine grape	extracellular	33.55	31.68
VIT_01s0127g00120.t01	Wine grape	extracellular	32.46	30.9
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	33.77	29.73

Protein Annotations

EntrezGene:100243033	wikigene:100243033	Gene3D:2.160.20.10	MapMan:21.3.5.1.1	ProteinID:CBI24904	ProteinID:CBI24904.3
UniProt:D7T323	EMBL:FN595509	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
EntrezGene:LOC100243033	wikigene:LOC100243033	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF28
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	TIGR:TC58604	UniParc:UPI0001BE233E	ArrayExpress:VIT_13s0064g00750
EnsemblPlantsGene:VIT_13s0064g00750	EnsemblPlants:VIT_13s0064g00750.t01	unigene:Vvi.15013	RefSeq:XP_002274775	RefSeq:XP_002274775.1	:

Description

No Description!

Coordinates

chr13:-:22507982..22515439

Molecular Weight (calculated)

50395.6 Da

IEP (calculated)

4.632

GRAVY (calculated)

-0.313

Length

456 amino acids

Sequence
(BLAST)

001: MCKGCFIISC RCYLSNDFQD DPLANFLDQA PGYDPSAYPS FFGTIHDDRN DDFEERFANL KMEYEPEIID SMRYDQLGTP ATLLGEVNVD DYGAEGDGIT
101: DDTEAFKKAW KETCSSNVGV LVVPEKKYRL KPITFSGPCK SDFVMLKILG MIVASNDRSD YAKDRRHWLL FNNIKNFIVE GQGTIDGNGK IWWKNSCKIN
201: KTQPCTVAPT AVTFRRCENL RVCGLNIKNA QQMHVRFEQS VDVQAFNVML TAPEDSPNTD GIHVTGSQNV QIISSVIRTG DDCISIVNGS KNVQALDVTC
301: GPGHGISIGS LGEGNSEAFV SNVMVNKAKL IGTTNGVRIK TWQGGSGYAK NIVFQNIIME NVSNPIIIDQ NYCDQDTPCE EQDSAVQIKG VVYKNIKGTS
401: ASEMAIKFNC SSTFPCQGIV LQDIDLVSYE EDREANSTCM NVMELETRGR VSPTCS

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.