Factsheet for VIT_01s0127g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035101	Potato	extracellular, golgi	70.77	70.48
Solyc05g005040.2.1	Tomato	extracellular	69.1	70.28
KRH74551	Soybean	extracellular	66.81	69.41
KRH69612	Soybean	extracellular	66.39	68.83
GSMUA_Achr1P12720_001	Banana	extracellular	54.28	63.41
AT3G26610.1	Thale cress	extracellular	60.54	61.7
CDX83631	Canola	extracellular	60.33	61.36
Bra025216.1-P	Field mustard	extracellular	60.13	61.28
CDY13645	Canola	extracellular	59.71	60.85
Os01t0549000-00	Rice	extracellular	32.78	55.28
KXG32718	Sorghum	extracellular	49.27	54.13
Zm00001d011156_P001	Maize	plastid	48.23	52.98
VIT_14s0066g01060.t01	Wine grape	extracellular	45.3	44.93
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	48.02	44.4
VIT_05s0020g00420.t01	Wine grape	extracellular	39.67	39.83
VIT_07s0005g02090.t01	Wine grape	extracellular	37.79	38.92
VIT_14s0060g00620.t01	Wine grape	extracellular	36.95	38.15
VIT_13s0064g00760.t01	Wine grape	cytosol	26.3	37.95
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	29.23	37.74
VIT_17s0000g05670.t01	Wine grape	extracellular	30.48	37.15
VIT_09s0002g06380.t01	Wine grape	cytosol	30.48	35.27
VIT_09s0002g06610.t01	Wine grape	extracellular	28.6	35.22
VIT_17s0000g05660.t01	Wine grape	extracellular	28.18	34.88
VIT_08s0007g08330.t01	Wine grape	extracellular	31.94	34.46
VIT_08s0007g07760.t01	Wine grape	extracellular	31.11	34.25
VIT_08s0007g07750.t01	Wine grape	extracellular	31.32	33.94
VIT_08s0007g07780.t01	Wine grape	extracellular	30.27	33.41
VIT_08s0007g07770.t01	Wine grape	extracellular	30.48	33.03
VIT_09s0002g06580.t01	Wine grape	cytosol	26.72	32.74
VIT_13s0064g00750.t01	Wine grape	cytosol	30.9	32.46
VIT_09s0002g06650.t01	Wine grape	extracellular	27.35	32.43

Protein Annotations

EntrezGene:100243159	wikigene:100243159	Gene3D:2.160.20.10	MapMan:21.3.5.1.3	ProteinID:CBI28580	ProteinID:CBI28580.3
UniProt:D7TDK7	EMBL:FN595761	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100243159
wikigene:LOC100243159	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF12	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00015CCCE1
ArrayExpress:VIT_01s0127g00120	EnsemblPlantsGene:VIT_01s0127g00120	EnsemblPlants:VIT_01s0127g00120.t01	RefSeq:XP_002266099	RefSeq:XP_002266099.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:7453821..7456480

Molecular Weight (calculated)

52601.8 Da

IEP (calculated)

8.700

GRAVY (calculated)

-0.222

Length

479 amino acids

Sequence
(BLAST)

001: MKRDKNPRLV FLLVFLVLIF TTLSITSVDA RKHHSKKSRS HSKHHKHRSG NGNSAPDSEN PPAPAPAPLP PYASYPPQSR IFDVLSFGAK GDGISDDSKA
101: LLAAWGAACK VPGATLEIPS EFKFLIEPIT LQGPCMPRLV LQIDGTLLAP PKVASWPKSS LFQWINFKWL HNFTIQGTGT VDGQGSNWWS LSQIHYIQKR
201: SKDIPNMKPT ALRFYASYDV TVCNIRIINS PQCHLKFDYS GRVNVTNITI SSPENSPNTD GIHLQNTQDV EIQHSNIGCG DDCVSIQTGC SNVHVHHINC
301: GPGHGISLGG LGKEKSAACV SNLVVDNISV QNALYGVRIK TWQGGIGSVK NVSFSNIQVS DVKVPIMIDQ YYCDKHICKN QTGAVAISGV TYNQIIGTYS
401: VQPIHLACSN NVPCTDVDLI DIQLNPSPRY RSFQQALCWN SYGKSQAPLV PSSIDYCLRR HSGSFMEIAK SHEIICQRS

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.