Factsheet for Zm00001d011156_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32718	Sorghum	extracellular	87.84	87.84
Os01t0549000-00	Rice	extracellular	51.83	79.58
GSMUA_Achr1P12720_001	Banana	extracellular	51.61	54.88
KRH69612	Soybean	extracellular	51.61	48.7
KRH74551	Soybean	extracellular	51.38	48.59
VIT_01s0127g00120.t01	Wine grape	extracellular	52.98	48.23
AT3G26610.1	Thale cress	extracellular	49.77	46.17
CDX83631	Canola	extracellular	48.85	45.22
Bra025216.1-P	Field mustard	extracellular	48.62	45.11
CDY13645	Canola	extracellular	48.39	44.89
Solyc05g005040.2.1	Tomato	extracellular	47.48	43.95
PGSC0003DMT400035101	Potato	extracellular, golgi	47.71	43.24
Zm00001d045974_P001	Maize	extracellular	38.76	40.33
Zm00001d009057_P001	Maize	extracellular	34.86	35.93
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	41.74	35.27
Zm00001d044110_P001	Maize	extracellular	43.81	35.24
Zm00001d011444_P002	Maize	extracellular	43.58	35.12
Zm00001d040725_P002	Maize	extracellular, vacuole	39.91	34.66
Zm00001d038874_P002	Maize	extracellular	32.57	34.47
Zm00001d040589_P001	Maize	extracellular	39.22	34.27
Zm00001d034551_P001	Maize	extracellular	32.34	32.34
Zm00001d034552_P001	Maize	extracellular	32.57	32.2
Zm00001d015129_P001	Maize	mitochondrion	37.16	31.4
Zm00001d048079_P001	Maize	extracellular	31.88	30.09
Zm00001d039668_P001	Maize	plastid	29.82	29.75
Zm00001d034559_P001	Maize	extracellular	32.11	29.47
Zm00001d013032_P001	Maize	extracellular	32.34	28.95
Zm00001d038875_P001	Maize	extracellular	27.98	25.9
Zm00001d009167_P001	Maize	extracellular	39.45	22.45

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	ProteinID:AQK96036.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049
GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0040007	GO:GO:0045490	GO:GO:0048046
GO:GO:0052546	GO:GO:0060773	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K7VYM8
PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF92	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002209A88	EnsemblPlantsGene:Zm00001d011156	EnsemblPlants:Zm00001d011156_P001
EnsemblPlants:Zm00001d011156_T001	SEG:seg	:	:	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr8:-:141117980..141120416

Molecular Weight (calculated)

46160.5 Da

IEP (calculated)

8.979

GRAVY (calculated)

0.075

Length

436 amino acids

Sequence
(BLAST)

001: MRSSVASAAL LVTCLVVAAA ARSTGRTTLS VLSFGAAGNG VTDDAQALVA AWQVACRVPR ATVLVLPSGH RFLLSPVTLQ GPCSAKLTLQ IDGTVLAPPE
101: MGSWPKPRRP LQWLNFKWLQ GFSIQGTGAV DGGQQNLDLD MKCCLSITHF YLQTSTGTGH WHSPGVKPTL IRFYNSFNVS VRNIRISNSP QCHLKFDSSG
201: GIRVKNVTIS SPGDSPNTDG IHLQNTKDVE IRSSTIGCGD DCVSIQTGCS NVHMKNVVCN PGHGISLGGL GKDNSLACVS DVVAENIVVQ NALYGVRIKT
301: WQGGVGSVRN ITFSNVRVAN VATPIAIDQF YCDRGGARCA NRTGAVAIAG VAYRRVVGTY TFQPLRLACS DARPCTGVTM LDVRLSPAAA GGTVAPLCWN
401: SYGEARGTII QPLSVGCLQR SNGYAMPLTQ PFNYTC

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.