Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034552_P001 | Maize | extracellular | 94.04 | 92.97 |
| EER90686 | Sorghum | plastid | 77.06 | 77.06 |
| TraesCS5B01G468700.1 | Wheat | extracellular | 63.76 | 67.8 |
| TraesCS5D01G470100.1 | Wheat | extracellular | 62.84 | 66.83 |
| TraesCS5B01G469000.1 | Wheat | extracellular | 61.7 | 66.26 |
| Zm00001d034559_P001 | Maize | extracellular | 72.02 | 66.11 |
| TraesCS5A01G459000.1 | Wheat | extracellular | 61.93 | 66.01 |
| TraesCS5D01G470200.1 | Wheat | extracellular | 63.07 | 65.63 |
| TraesCS5B01G468900.1 | Wheat | extracellular | 62.61 | 65.16 |
| HORVU5Hr1G109970.1 | Barley | extracellular | 61.47 | 64.58 |
| TraesCS5A01G459100.1 | Wheat | extracellular | 61.24 | 64.18 |
| Zm00001d013032_P001 | Maize | extracellular | 69.27 | 62.01 |
| HORVU5Hr1G109980.2 | Barley | extracellular, plastid | 61.93 | 60.13 |
| Os03t0808000-00 | Rice | extracellular | 61.7 | 58.23 |
| Zm00001d038874_P002 | Maize | extracellular | 36.24 | 38.35 |
| Zm00001d048079_P001 | Maize | extracellular | 39.91 | 37.66 |
| Zm00001d039668_P001 | Maize | plastid | 34.86 | 34.78 |
| Zm00001d009057_P001 | Maize | extracellular | 31.88 | 32.86 |
| Zm00001d040589_P001 | Maize | extracellular | 37.16 | 32.46 |
| Zm00001d011156_P001 | Maize | plastid | 32.34 | 32.34 |
| Zm00001d015129_P001 | Maize | mitochondrion | 37.84 | 31.98 |
| Zm00001d045974_P001 | Maize | extracellular | 30.28 | 31.5 |
| Zm00001d040725_P002 | Maize | extracellular, vacuole | 35.09 | 30.48 |
| Zm00001d038875_P001 | Maize | extracellular | 32.34 | 29.94 |
| Zm00001d011444_P002 | Maize | extracellular | 36.7 | 29.57 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 34.86 | 29.46 |
| Zm00001d044110_P001 | Maize | extracellular | 36.24 | 29.15 |
| Zm00001d009167_P001 | Maize | extracellular | 34.86 | 19.84 |
Protein Annotations
| EntrezGene:103644217 | Gene3D:2.160.20.10 | MapMan:21.3.5.1.1 | UniProt:A0A1D6L8J1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | ProteinID:ONM10553.1 | PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF98 |
| InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI0002214399 | EnsemblPlantsGene:Zm00001d034551 | EnsemblPlants:Zm00001d034551_P001 | EnsemblPlants:Zm00001d034551_T001 | SEG:seg | : |
Description
Polygalacturonase QRT2
Coordinates
chr1:-:296036999..296045917
Molecular Weight (calculated)
46901.7 Da
IEP (calculated)
8.633
GRAVY (calculated)
-0.376
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLVYMVTLL PLLFMSGVLE AAGAGNDSSA DGTNGNLHSS GTSRPAAAPR GRSLQASQSS VYSVDRYGAR GDGRNDDTRA LEMAWKAACA SPRPAVVLVP
101: DGRRYLLKLL TLRGPCKSSV TLTVKGTLVA SPNRADWSDN DRRHWIVFRS IDKLTVNGGG AIDGNGEKWW PHSCKINKAL PCKEAPTALS FHYCVDLKVE
201: DLKIVNSQQI HMSVEDSANA LLARLSITAP GTSPNTDGIH ITRSKDVRVT DCKIKTGDDC MSIENGTHNL HVSKVNCGPG HGISIGSLGD DNSRAEVSGI
301: TIDSVQLHGT TNGARIKTYQ GGSGYAKDIT FQNMVMYDVK NPIIIDQNYC DKAKPCGEQE SAVQVSGVVF KNIRGTTSTK DAIKMNCSEN VPCQGITLQN
401: IDLKMQDGKG NTRSTCQNAK WTEFGTVRPQ PCTAIK
101: DGRRYLLKLL TLRGPCKSSV TLTVKGTLVA SPNRADWSDN DRRHWIVFRS IDKLTVNGGG AIDGNGEKWW PHSCKINKAL PCKEAPTALS FHYCVDLKVE
201: DLKIVNSQQI HMSVEDSANA LLARLSITAP GTSPNTDGIH ITRSKDVRVT DCKIKTGDDC MSIENGTHNL HVSKVNCGPG HGISIGSLGD DNSRAEVSGI
301: TIDSVQLHGT TNGARIKTYQ GGSGYAKDIT FQNMVMYDVK NPIIIDQNYC DKAKPCGEQE SAVQVSGVVF KNIRGTTSTK DAIKMNCSEN VPCQGITLQN
401: IDLKMQDGKG NTRSTCQNAK WTEFGTVRPQ PCTAIK
001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S
Arabidopsis Description
ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.