Factsheet for TraesCS5D01G470200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G459100.1	Wheat	extracellular	93.56	94.23
TraesCS5B01G468900.1	Wheat	extracellular	94.03	94.03
HORVU5Hr1G109970.1	Barley	extracellular	87.11	87.95
TraesCS5D01G470100.1	Wheat	extracellular	75.89	77.56
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	50.6	65.43
EER90686	Sorghum	plastid	66.59	63.99
Zm00001d034551_P001	Maize	extracellular	65.63	63.07
Zm00001d034552_P001	Maize	extracellular	66.35	63.04
EER93240	Sorghum	extracellular	65.87	61.06
TraesCS7D01G164200.1	Wheat	extracellular	60.86	60.71
EER90681	Sorghum	extracellular	67.3	60.39
Os03t0808000-00	Rice	extracellular	65.16	59.09
Zm00001d034559_P001	Maize	extracellular	64.2	56.63
Zm00001d013032_P001	Maize	extracellular	64.44	55.44
TraesCS1D01G066400.1	Wheat	cytosol	44.39	48.82
TraesCS1D01G066300.1	Wheat	extracellular, golgi	53.22	44.69
TraesCS4D01G243600.1	Wheat	extracellular	43.68	42.26
TraesCS2D01G402100.1	Wheat	extracellular	40.1	41.48
TraesCS1D01G370300.3	Wheat	extracellular	39.38	40.15
TraesCS2D01G402200.1	Wheat	extracellular	37.23	39.9
TraesCS2D01G402300.1	Wheat	extracellular	31.26	39.34
TraesCS3D01G130300.1	Wheat	extracellular	36.52	38.15
TraesCS2D01G402000.1	Wheat	extracellular	38.42	37.62
TraesCS1D01G370700.1	Wheat	extracellular	36.04	36.04
TraesCS3D01G130400.1	Wheat	extracellular	34.61	35.19
TraesCS7D01G326800.1	Wheat	extracellular	38.9	33.4
TraesCS1D01G370800.1	Wheat	extracellular	34.13	32.95
TraesCS3D01G021700.1	Wheat	extracellular	33.17	31.52
TraesCS1D01G425600.1	Wheat	extracellular	38.9	30.93
TraesCS1D01G311000.1	Wheat	extracellular	35.32	30.9
TraesCS3D01G223900.1	Wheat	extracellular	38.66	30.22

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF98	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS5D01G470200	EnsemblPlants:TraesCS5D01G470200.1	SEG:seg

Description

No Description!

Coordinates

chr5D:-:510965550..510966809

Molecular Weight (calculated)

45129.2 Da

IEP (calculated)

9.351

GRAVY (calculated)

-0.209

Length

419 amino acids

Sequence
(BLAST)

001: MASTTTRLVC APLLMLLLLS VSTANSVQET GSSLKSSTQK NVFVVDNYGA RGDGKHDDTQ ALARAWNAAC SSSRPAVLLV PKGKTYLLKS ITLSGPCRSS
101: IVFKVKGTLI APPSMSAWTD NDRRRWIFLQ RITGLTVNGG GTISGNGEIW WNNSCKTNKA LPCKGAPTAL TFHLCNNLKV ENLKLVNSQQ IHVSVQDCSN
201: VHLARLTITA PGTSPNTDGI HITHSKYVQV RDCLIKTGDD CISIENGTHD LHVTKVVCGP GHGISIGSLG DDNSRAEVSR IYIDTVRLYG TSNGARIKTW
301: QGGSGYAKDI VFQNMIMDNV QNPIIIDQNY CDSAKPCKGQ NSAVEVRNVV FKNIQGTTIS KDAIKLSCSK NLPCSGIALE NIDLKLEGGK GDTESTCQNA
401: KWRKSGNVIP LPCKGKIKL

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.