Factsheet for TraesCS1D01G370700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G382700.1	Wheat	extracellular	97.61	97.61
TraesCS1A01G365200.1	Wheat	extracellular	96.9	88.45
HORVU1Hr1G079140.6	Barley	plastid	93.56	80.16
TraesCS1D01G370800.1	Wheat	extracellular	59.67	57.6
TraesCS3D01G021700.1	Wheat	extracellular	57.76	54.88
TraesCS1D01G370300.3	Wheat	extracellular	52.74	53.77
GSMUA_Achr3P13670_001	Banana	extracellular	42.48	39.12
VIT_09s0002g06380.t01	Wine grape	cytosol	38.42	38.89
CDY54312	Canola	extracellular	40.81	38.51
PGSC0003DMT400001638	Potato	extracellular, plastid	40.81	38.08
CDY57689	Canola	extracellular	40.57	38.03
Bra003555.1-P	Field mustard	extracellular	40.33	37.81
Solyc03g116500.2.1	Tomato	nucleus	40.33	37.39
KRH09752	Soybean	extracellular	40.57	37.12
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	28.4	36.73
AT1G80170.1	Thale cress	extracellular	38.9	36.71
Solyc06g068040.2.1	Tomato	nucleus	38.19	36.61
TraesCS5D01G470200.1	Wheat	extracellular	36.04	36.04
TraesCS5D01G470100.1	Wheat	extracellular	35.08	35.85
TraesCS2D01G402200.1	Wheat	extracellular	33.41	35.81
TraesCS2D01G402300.1	Wheat	extracellular	28.16	35.44
TraesCS2D01G402100.1	Wheat	extracellular	33.41	34.57
TraesCS7D01G164200.1	Wheat	extracellular	34.37	34.29
TraesCS4D01G243600.1	Wheat	extracellular	34.13	33.03
TraesCS2D01G402000.1	Wheat	extracellular	32.94	32.24
TraesCS3D01G130400.1	Wheat	extracellular	31.5	32.04
TraesCS3D01G130300.1	Wheat	extracellular	30.07	31.42
TraesCS1D01G066400.1	Wheat	cytosol	27.92	30.71
TraesCS1D01G311000.1	Wheat	extracellular	34.13	29.85
TraesCS7D01G326800.1	Wheat	extracellular	32.94	28.28
TraesCS1D01G066300.1	Wheat	extracellular, golgi	32.7	27.45
TraesCS1D01G425600.1	Wheat	extracellular	32.7	26.0
TraesCS3D01G223900.1	Wheat	extracellular	31.98	25.0

Protein Annotations

EnsemblPlants:TraesCS1D01G370700.1	EnsemblPlantsGene:TraesCS1D01G370700	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	PFAM:PF00295	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF51126	MapMan:50.3.2	:	:	:

Description

No Description!

Coordinates

chr1D:+:449281806..449283805

Molecular Weight (calculated)

44363.8 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.016

Length

419 amino acids

Sequence
(BLAST)

001: MATAMALLRL AALAGAVALL LPGAAEARIL LSLDDFGAVG DGTADDTQAL VDAWTAACAS TNGHVVIHVP AGRSYQIWPV TLAGPCRDEI MIFVSGNIIA
101: PDSPEDWERR DGGKWLHFFQ VQDLTVSGGG VIDGRGQEWW AQACKGRHRN DKHCTAPEAP KALHFEECHG VRVQGVTLQN GQQQHLTFTR CSNARASFLR
201: VASPESSPGT DGIHLVNSIS VHVNDIHIAT GGACVSMVGN CTDVRLRYIS CGPGNGISIG SIGETPVADR LEKIEVDTMF IANTSNGLLI KTWQDGCGYA
301: RKVKFANVVM KNVSDPIIID QYRSEHPIPC GSTAATRTVA VEKIDYVNIA GTSASKRAVT FSCSDVVPCR QVSLKDVNLK RLSGRGASAY CRSASGKAAG
401: VVVPESCLAG ARAAGVEEQ

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.