Factsheet for TraesCS1D01G370800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G382800.1	Wheat	extracellular	96.77	96.77
TraesCS1A01G365300.1	Wheat	extracellular	96.08	95.86
HORVU1Hr1G079130.2	Barley	extracellular	92.17	92.17
TraesCS3D01G021700.1	Wheat	extracellular	86.41	85.03
Os05t0542900-01	Rice	extracellular	65.9	64.27
TraesCS1D01G370700.1	Wheat	extracellular	57.6	59.67
Zm00001d038875_P001	Maize	extracellular	59.91	55.2
KXG22449	Sorghum	extracellular, golgi	58.76	54.49
TraesCS1D01G370300.3	Wheat	extracellular	48.62	51.34
VIT_09s0002g06380.t01	Wine grape	cytosol	37.33	39.13
KRH09752	Soybean	extracellular	41.24	39.08
Solyc03g116500.2.1	Tomato	nucleus	39.4	37.83
PGSC0003DMT400001638	Potato	extracellular, plastid	38.94	37.64
CDY54312	Canola	extracellular	38.25	37.39
Bra003555.1-P	Field mustard	extracellular	38.02	36.91
CDY57689	Canola	extracellular	38.02	36.91
GSMUA_Achr3P13670_001	Banana	extracellular	38.48	36.7
AT1G80170.1	Thale cress	extracellular	37.1	36.26
Solyc06g068040.2.1	Tomato	nucleus	36.18	35.93
TraesCS2D01G402100.1	Wheat	extracellular	32.26	34.57
TraesCS2D01G402200.1	Wheat	extracellular	31.11	34.53
TraesCS5D01G470200.1	Wheat	extracellular	32.95	34.13
TraesCS5D01G470100.1	Wheat	extracellular	32.03	33.9
TraesCS7D01G164200.1	Wheat	extracellular	32.72	33.81
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	24.88	33.33
TraesCS4D01G243600.1	Wheat	extracellular	32.49	32.56
TraesCS2D01G402300.1	Wheat	extracellular	24.88	32.43
TraesCS2D01G402000.1	Wheat	extracellular	31.57	32.01
TraesCS1D01G066400.1	Wheat	cytosol	26.96	30.71
TraesCS1D01G311000.1	Wheat	extracellular	33.87	30.69
TraesCS3D01G130300.1	Wheat	extracellular	27.42	29.68
TraesCS3D01G130400.1	Wheat	extracellular	27.88	29.37
TraesCS1D01G066300.1	Wheat	extracellular, golgi	31.34	27.25
TraesCS1D01G425600.1	Wheat	extracellular	32.72	26.95
TraesCS3D01G223900.1	Wheat	extracellular	32.26	26.12
TraesCS7D01G326800.1	Wheat	extracellular	29.03	25.82

Protein Annotations

EnsemblPlants:TraesCS1D01G370800.1	EnsemblPlantsGene:TraesCS1D01G370800	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	PFAM:PF00295	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chr1D:+:449309757..449311599

Molecular Weight (calculated)

45887.0 Da

IEP (calculated)

4.638

GRAVY (calculated)

-0.070

Length

434 amino acids

Sequence
(BLAST)

001: MALLASAPLL LAALAGAVAL LLPGAAEARV LLSLDDFGAV GDGIANDTQA FVDAWEAACA TGGNTYLNVP AGKSYQIWPV TLAGPCRGEI KLMISGNIIA
101: PESPEEWEDG DQGRWLHFTG VGDLSLSGGG IVDGRGHQWW AGACEDENCT SYRQHEVAPM ALHFEDCQDV SVKGLTLQNS QRQHLVFTRC YNVEANYLRV
201: TSPEYSPGTA GVLVVSSTNV HIKDDLFSVG GDCVSIVGNC SDVRLRAISC GPGLGISIGG LGENQSNHKI EKIKTDTMFI SNTKNGVRVK TYEDGCGFAR
301: KVKFAQIMMR NVANPIVIDQ HYSAANRGTQ CGTPNGSAVA VENINYIDIT GTSATERAVT FACSDAMPCR RLYLDGVNLT TAGGGSTSAF CHQAFGKHVG
401: DVLPESCLGK EDFVQLQAAP TTGDAQDGED AADW

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.