CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 3
golgi 3
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038875_P001	Maize	extracellular	79.06	78.56
HORVU1Hr1G079130.2	Barley	extracellular	57.48	61.98
Os05t0542900-01	Rice	extracellular	57.05	60.0
TraesCS1B01G382800.1	Wheat	extracellular	55.13	59.45
TraesCS1A01G365300.1	Wheat	extracellular	55.13	59.31
TraesCS1D01G370800.1	Wheat	extracellular	54.49	58.76
TraesCS3A01G024500.1	Wheat	extracellular	52.78	55.88
TraesCS3B01G020300.1	Wheat	extracellular	51.92	54.85
TraesCS3D01G021700.1	Wheat	extracellular	51.28	54.42
HORVU3Hr1G006180.2	Barley	extracellular	49.57	53.95
EES18597	Sorghum	extracellular	45.94	52.7
KRH09752	Soybean	extracellular	36.97	37.77
PGSC0003DMT400001638	Potato	extracellular, plastid	36.11	37.64
VIT_09s0002g06380.t01	Wine grape	cytosol	33.12	37.44
Solyc03g116500.2.1	Tomato	nucleus	36.11	37.39
CDY54312	Canola	extracellular	34.83	36.71
Solyc06g068040.2.1	Tomato	nucleus	34.19	36.61
GSMUA_Achr3P13670_001	Banana	extracellular	35.47	36.48
CDY57689	Canola	extracellular	34.83	36.47
Bra003555.1-P	Field mustard	extracellular	34.62	36.24
AT1G80170.1	Thale cress	extracellular	34.19	36.04
KXG26899	Sorghum	extracellular	29.49	32.86
KXG39856	Sorghum	extracellular	29.91	32.56
EER93240	Sorghum	extracellular	30.77	31.86
EER90686	Sorghum	plastid	29.49	31.65
EES04449	Sorghum	extracellular	33.97	30.58
EER90681	Sorghum	extracellular	30.34	30.41
KXG32718	Sorghum	extracellular	26.5	28.44
KXG31745	Sorghum	extracellular	26.07	28.31
EES01142	Sorghum	extracellular	30.77	27.07
EES00620	Sorghum	extracellular	28.85	26.68
EES20001	Sorghum	extracellular	30.56	26.63
KXG32428	Sorghum	mitochondrion	28.21	25.38
KXG32426	Sorghum	extracellular	29.7	20.09

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1B6P9M7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	EnsemblPlants:KXG22449	ProteinID:KXG22449	ProteinID:KXG22449.1	PFAM:PF00295	PANTHER:PTHR31375
PANTHER:PTHR31375:SF4	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	EnsemblPlantsGene:SORBI_3009G216300	SUPFAM:SSF51126	UniParc:UPI00081AD153
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:56079089..56082006

Molecular Weight (calculated)

49779.1 Da

IEP (calculated)

6.689

GRAVY (calculated)

-0.044

Length

468 amino acids

Sequence
(BLAST)

001: MRPTSRLRSA CFKYPAPAPP ASVSGAQQHS VTLALLLLVP TLCSTMARGT VLLLLTAAFA AALLPDAAES RILLTLHDFG AVGDGVADDT KALADAWTAA
101: CTAGDNVILN VPAAGTFQIW PLTLAGPCRS EIKLLISGDI VAPESPSDWG QGQRSQWLHF HKVQDLKITG GGIIDGRGQQ WWAQSSLMGA QPAPKAVHFE
201: DCQGISVKGI TLQNSQSYHL TFTRSSNVEA NYLRVTSPED SIDTKGIHLV DSFNVHVMDN LISTGDDCVS IVGNCEDVRL RAISCGPGHG ISIGTLGVNN
301: SVDYVEKIKV DTLFISNTKN GVRVRTTRSG GGGFARKVKF ESIVMRNVTN PIIVDQGNSD HLPASSEAVA PAAATAVQVE KINYIDITGT SASKHAVTFS
401: CSDAKPCRHL SLVNVNLTQV DGTKALSYCR KAFGRSIGTV IPESCLSKED FVQHVPQRSQ DGEEDSDS

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.