Factsheet for TraesCS3A01G024500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G021700.1	Wheat	extracellular	94.34	94.56
TraesCS3B01G020300.1	Wheat	extracellular	92.99	92.78
TraesCS1A01G365300.1	Wheat	extracellular	84.62	85.98
HORVU3Hr1G006180.2	Barley	extracellular	82.35	84.65
Os05t0542900-01	Rice	extracellular	62.9	62.47
Zm00001d038875_P001	Maize	extracellular	57.47	53.93
TraesCS1A01G365200.1	Wheat	extracellular	55.43	53.38
KXG22449	Sorghum	extracellular, golgi	55.88	52.78
TraesCS1A01G364800.2	Wheat	extracellular	48.19	51.45
VIT_09s0002g06380.t01	Wine grape	cytosol	37.33	39.86
KRH09752	Soybean	extracellular	40.5	39.08
PGSC0003DMT400001638	Potato	extracellular, plastid	38.46	37.86
Solyc03g116500.2.1	Tomato	nucleus	38.69	37.83
CDY54312	Canola	extracellular	37.78	37.61
GSMUA_Achr3P13670_001	Banana	extracellular	38.46	37.36
Bra003555.1-P	Field mustard	extracellular	37.78	37.36
CDY57689	Canola	extracellular	37.78	37.36
Solyc06g068040.2.1	Tomato	nucleus	36.65	37.07
AT1G80170.1	Thale cress	extracellular	36.65	36.49
TraesCS2A01G405600.1	Wheat	extracellular	25.11	34.8
TraesCS5A01G459000.1	Wheat	extracellular	31.9	34.47
TraesCS5A01G459100.1	Wheat	extracellular	32.35	34.38
TraesCS4A01G066700.1	Wheat	extracellular	33.48	34.18
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	31.22	34.07
TraesCS7A01G162500.1	Wheat	extracellular	32.13	33.81
TraesCS2A01G405100.1	Wheat	extracellular	30.77	32.61
TraesCS1A01G124300.1	Wheat	extracellular, plastid	31.9	32.56
TraesCS1A01G311100.1	Wheat	extracellular	32.35	29.55
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	35.07	29.52
TraesCS3A01G129500.1	Wheat	extracellular	27.15	29.48
TraesCS3A01G129400.1	Wheat	extracellular	26.47	28.54
TraesCS1A01G418000.1	Wheat	extracellular	31.67	27.45
TraesCS3A01G225800.2	Wheat	extracellular	33.26	27.27
TraesCS7A01G330000.1	Wheat	extracellular	29.86	27.05

Protein Annotations

EnsemblPlants:TraesCS3A01G024500.1	EnsemblPlantsGene:TraesCS3A01G024500	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	PFAM:PF00295	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chr3A:+:13188518..13190762

Molecular Weight (calculated)

47236.8 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.163

Length

442 amino acids

Sequence
(BLAST)

001: MALRARTPLL LAALAGAVAL LLPGAVEARV LLSLDDFGAV GDGIANDTQA LVDAWKAACA TGGTTYLNVP AGKSYQIWPV TLAGPCRGEI KLMISGNIIA
101: PEDPEEWSDG DQGRWLHFSG VGDLSLSGGG IVDGRGQQWW AGSCDDENCT KYRPYEVAPM ALHFEDCRDV SVKGITVQNS QRQHLVFTRC HDVEANYLRV
201: TSPEYSPGTV GVLVVSSTDV HIKHDLFSVG GDCVSIVGNS SDIRLRAISC GPGLGISIGG LGENQSNDMI HKIKMDTMLL SNTKNGLRIK TYENGCGYAR
301: KVKFAHITMR NVANPIVIDQ HYYSASNSNR GTPCGTPSAS AVAVEKIKYI DITGTSATER AVTFACSDAM PCRRLYLDGV NLKTVGGGST SAYCYQAFGK
401: QVGDVLPESC LGKEKEDFLR LQAPTAAGTP QGDTEDEEDD DW

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.