Factsheet for TraesCS3A01G225800.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G031180.1	Barley	extracellular	26.16	100.0
TraesCS3D01G223900.1	Wheat	extracellular	97.4	97.95
TraesCS3B01G258600.2	Wheat	extracellular	97.22	97.58
HORVU3Hr1G056270.10	Barley	extracellular	94.99	96.24
Os01t0637500-00	Rice	cytosol, extracellular	56.03	89.35
Os01t0636500-01	Rice	extracellular	85.34	85.5
EES01142	Sorghum	extracellular	81.63	82.71
Zm00001d011444_P002	Maize	extracellular	82.75	82.44
Zm00001d044110_P001	Maize	extracellular	80.89	80.44
TraesCS1A01G418000.1	Wheat	extracellular	69.76	73.73
GSMUA_Achr6P22080_001	Banana	extracellular	61.04	67.84
GSMUA_Achr5P09080_001	Banana	extracellular	60.3	66.74
GSMUA_Achr4P02960_001	Banana	extracellular	57.51	65.26
GSMUA_Achr1P27280_001	Banana	extracellular	59.37	62.75
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	59.37	61.78
KRG99364	Soybean	extracellular, nucleus	60.3	60.41
KRH45648	Soybean	nucleus	59.93	60.04
Bra031724.1-P	Field mustard	extracellular	56.96	59.61
CDX69569	Canola	extracellular	48.42	59.45
CDY09873	Canola	extracellular	48.05	59.0
Bra008748.1-P	Field mustard	extracellular	48.05	59.0
PGSC0003DMT400035162	Potato	extracellular	55.84	58.9
Solyc05g005170.2.1	Tomato	nucleus	55.47	58.86
AT5G14650.1	Thale cress	extracellular	47.5	58.85
CDY37962	Canola	extracellular, golgi, vacuole	58.07	58.83
CDX93397	Canola	extracellular, golgi, vacuole	57.7	58.35
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	57.7	58.35
CDY54228	Canola	extracellular, golgi, vacuole	57.14	58.33
KRG93260	Soybean	extracellular	47.87	58.24
KRH56581	Soybean	extracellular	47.31	58.09
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	56.96	57.82
AT1G60590.1	Thale cress	extracellular	57.88	57.78
VIT_14s0066g01060.t01	Wine grape	extracellular	51.76	57.76
CDY20962	Canola	extracellular, golgi, vacuole	56.77	57.63
CDY47212	Canola	extracellular	56.96	57.28
CDY50367	Canola	extracellular, golgi	56.96	57.28
CDY20612	Canola	extracellular	56.4	57.25
AT1G10640.1	Thale cress	extracellular, golgi	56.4	57.14
Bra027148.1-P	Field mustard	extracellular	56.77	57.09
CDY34877	Canola	extracellular, golgi	51.58	56.85
Solyc07g015870.2.1	Tomato	extracellular	45.64	54.79
PGSC0003DMT400077010	Potato	cytosol	45.83	53.35
TraesCS7A01G330000.1	Wheat	extracellular	37.29	41.19
TraesCS1A01G311100.1	Wheat	extracellular	35.81	39.88
TraesCS5A01G459000.1	Wheat	extracellular	30.06	39.61
TraesCS5A01G459100.1	Wheat	extracellular	29.87	38.7
TraesCS7A01G162500.1	Wheat	extracellular	29.87	38.33
TraesCS2A01G405100.1	Wheat	extracellular	29.5	38.13
TraesCS2A01G405600.1	Wheat	extracellular	22.26	37.62
TraesCS1A01G364800.2	Wheat	extracellular	28.76	37.44
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	28.01	37.28
TraesCS4A01G066700.1	Wheat	extracellular	29.5	36.72
TraesCS1A01G124300.1	Wheat	extracellular, plastid	28.94	36.03
TraesCS3A01G129400.1	Wheat	extracellular	26.53	34.88
TraesCS3A01G129500.1	Wheat	extracellular	25.97	34.4
TraesCS3A01G024500.1	Wheat	extracellular	27.27	33.26
TraesCS1A01G365300.1	Wheat	extracellular	25.97	32.18
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	30.43	31.24
TraesCS1A01G365200.1	Wheat	extracellular	25.6	30.07

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31375	PANTHER:PTHR31375:SF56	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3A01G225800	EnsemblPlants:TraesCS3A01G225800.2	SEG:seg

Description

No Description!

Coordinates

chr3A:-:423487527..423491227

Molecular Weight (calculated)

57770.7 Da

IEP (calculated)

8.644

GRAVY (calculated)

-0.297

Length

539 amino acids

Sequence
(BLAST)

001: MKLRVKGFGL LLLLVLLALC STIDVCDARR GKHWRPRSSP SSSLLKKKGK AKKGSSHRQH GGNRRSPPPA PPGVGKGHQT PYQPSPNVPV SPSPSPSPKP
101: SPAKGNGHTS PQPSSPSCGK GRQPPPQPPP AASASPGAVF NVVDFGAKGD GISDDTKAFQ AAWAAACKLG ASTVLVPSEL EFLVGPISFS GPYCKPNILF
201: QLEGTILAPT NAKAWGSGLL QWLEFTKLSG LSIQGSGTIN GRGQQWWTYS DPNDDEDDDT QYNQELERMP RVKPTALRFY GSSNVVVAGI TIVNSSQCHL
301: KFDNCQGVLV HDLTISSPEN SLNTDGIHLQ NSKDVSIHHT NLACGDDCIS IQTGCSNIYI HNVNCGPGHG ISIGGLGRDN TKACVSNVTV RDVNMFRTMT
401: GVRIKTWQGG IGLVQDIRFS NIQVSEVQTP IMIDQFYCDK RTCTNQTSAV AVSGVQYENI RGTFTIKPLH FACSDSSPCS GITLTGVQLK PVQIAHYHLN
501: NPFCWQAFGE LFTPTIPPIA CLQIGKPAGN NLQSYHDIC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.