Factsheet for PGSC0003DMT400035162

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005170.2.1	Tomato	nucleus	96.67	97.24
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	72.02	71.04
KRH45648	Soybean	nucleus	70.45	66.91
Bra031724.1-P	Field mustard	extracellular	66.73	66.21
KRG99364	Soybean	extracellular, nucleus	69.67	66.17
Os05t0578600-01	Rice	cytosol, extracellular	40.31	66.03
CDY37962	Canola	extracellular, golgi, vacuole	68.69	65.98
CDX93397	Canola	extracellular, golgi, vacuole	68.69	65.85
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	68.69	65.85
GSMUA_Achr4P02960_001	Banana	extracellular	61.06	65.68
GSMUA_Achr6P22080_001	Banana	extracellular	62.23	65.57
CDY54228	Canola	extracellular, golgi, vacuole	67.12	64.96
CDY34877	Canola	extracellular, golgi	61.45	64.21
Os01t0637500-00	Rice	cytosol, extracellular	42.27	63.91
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	66.14	63.65
CDY20962	Canola	extracellular, golgi, vacuole	65.95	63.47
GSMUA_Achr5P09080_001	Banana	extracellular	60.47	63.45
CDY20612	Canola	extracellular	65.75	63.28
HORVU3Hr1G031180.1	Barley	extracellular	17.42	63.12
AT1G10640.1	Thale cress	extracellular, golgi	65.56	62.97
CDY50367	Canola	extracellular, golgi	65.17	62.13
CDY47212	Canola	extracellular	64.77	61.75
AT1G60590.1	Thale cress	extracellular	64.97	61.48
Bra027148.1-P	Field mustard	extracellular	64.38	61.38
GSMUA_Achr1P27280_001	Banana	extracellular	59.69	59.8
TraesCS1A01G418000.1	Wheat	extracellular	56.56	56.67
PGSC0003DMT400077010	Potato	cytosol	51.27	56.59
HORVU3Hr1G056270.10	Barley	extracellular	58.32	56.02
TraesCS3A01G225800.2	Wheat	extracellular	58.9	55.84
TraesCS1B01G448100.1	Wheat	extracellular	57.53	55.47
TraesCS3B01G258600.2	Wheat	extracellular	58.12	55.31
TraesCS3D01G223900.1	Wheat	extracellular	57.93	55.22
EES20001	Sorghum	extracellular	57.93	55.12
TraesCS1D01G425600.1	Wheat	extracellular	56.75	55.03
EES01142	Sorghum	extracellular	57.14	54.89
Os01t0636500-01	Rice	extracellular	57.73	54.83
HORVU1Hr1G091430.5	Barley	extracellular	58.51	53.97
Zm00001d011444_P002	Maize	extracellular	56.75	53.6
Zm00001d044110_P001	Maize	extracellular	56.56	53.32
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	52.05	51.55
PGSC0003DMT400035101	Potato	extracellular, golgi	43.64	46.36
PGSC0003DMT400007095	Potato	cytosol	38.55	45.29
PGSC0003DMT400013344	Potato	extracellular	41.1	44.49
PGSC0003DMT400075723	Potato	extracellular	40.7	42.8
PGSC0003DMT400017691	Potato	extracellular	27.01	39.32
PGSC0003DMT400008955	Potato	extracellular	26.22	38.51
PGSC0003DMT400056828	Potato	extracellular	29.94	38.44
PGSC0003DMT400001638	Potato	extracellular, plastid	33.66	38.31
PGSC0003DMT400055713	Potato	extracellular	32.88	36.68
PGSC0003DMT400080722	Potato	extracellular	32.88	36.52
PGSC0003DMT400070039	Potato	cytosol	27.79	34.63

Protein Annotations

EntrezGene:102586312	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	UniProt:M1B1X0	PFAM:PF00295
EnsemblPlantsGene:PGSC0003DMG400013516	PGSC:PGSC0003DMG400013516	EnsemblPlants:PGSC0003DMT400035162	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58
InterPro:PbH1	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002958691
RefSeq:XP_006356424.1	SEG:seg	:	:	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400013516]

Coordinates

chr5:-:8882392..8885738

Molecular Weight (calculated)

55806.6 Da

IEP (calculated)

8.387

GRAVY (calculated)

-0.239

Length

511 amino acids

Sequence
(BLAST)

001: MGRLSFRSVT FMFIVAFFVW SSLNVEVCNA RRGKHWRQHG TTSSVSLYKK KGKSHGSNNH HKSGGKPKPK YASPPPSTPI SPPSKGYDNV PSTNIFDVTN
101: FGAVGDGKTD DTKAFQAAWA AACKVEDSTM IVPSKYVFLV GPISFSGPYC QHNIVFQLDG TIIAPTDAKS WGSGIMQWLE FTKLVGITVK GSGVIDGRGS
201: VWWLDTPYDD PLDDELKLII PLNKTLLRHP PTPLNSSLSG KMPSIKPTAL RFYGSFNVTV TGITIQNSQQ CHLKFDNCIG VLVNNITVSS PGDSPNTDGI
301: HLQNSKDALI RSSNIACGDD CVSIQTGCTN VYVHNINCGP GHGISIGSLG KDNTKACVSN ITVKDVIMQN TMNGVRIKTW QGGSGSVQGV FFSNIQMNEV
401: QLPIVIDQFY CDKSRCKNQT AAVALSDINY AGIKGTYTVK PVHLACSDSM PCQDVTMMNI QLKPIQERYH MYDPFCWQTF GELYTPTQPP IECLQVGKPT
501: SNKIQADHDQ C

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.