Factsheet for PGSC0003DMT400007095

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100980.2.1	Tomato	extracellular	95.17	86.97
VIT_14s0060g00620.t01	Wine grape	extracellular	71.95	67.46
KRG96690	Soybean	extracellular	66.21	62.75
PGSC0003DMT400013344	Potato	extracellular	66.9	61.65
GSMUA_Achr11P...	Banana	extracellular	61.61	61.47
Os01t0296200-00	Rice	extracellular	37.01	60.53
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	65.06	56.49
PGSC0003DMT400075723	Potato	extracellular	59.77	53.5
HORVU1Hr1G067840.1	Barley	extracellular, plastid	58.16	53.15
TraesCS1B01G322500.1	Wheat	extracellular	58.39	52.48
TraesCS1A01G311100.1	Wheat	extracellular	58.16	52.27
TraesCS1D01G311000.1	Wheat	extracellular	57.24	51.98
Zm00001d040589_P001	Maize	extracellular	57.24	49.9
GSMUA_Achr3P08400_001	Banana	extracellular	63.68	49.29
EES00620	Sorghum	extracellular	56.55	48.62
Zm00001d009057_P001	Maize	extracellular	46.9	48.23
PGSC0003DMT400077010	Potato	cytosol	41.38	38.88
PGSC0003DMT400035162	Potato	extracellular	45.29	38.55
PGSC0003DMT400056828	Potato	extracellular	34.25	37.44
PGSC0003DMT400008955	Potato	extracellular	29.89	37.36
PGSC0003DMT400001638	Potato	extracellular, plastid	38.16	36.97
PGSC0003DMT400017691	Potato	extracellular	29.66	36.75
PGSC0003DMT400035101	Potato	extracellular, golgi	40.0	36.17
PGSC0003DMT400055713	Potato	extracellular	37.24	35.37
PGSC0003DMT400080722	Potato	extracellular	35.86	33.91
PGSC0003DMT400070039	Potato	cytosol	31.72	33.66

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0ZSG4
PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400002749	PGSC:PGSC0003DMG400002749	EnsemblPlants:PGSC0003DMT400007095	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF13	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI0002954BE1	SEG:seg	:	:	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400002749]

Coordinates

chr1:-:78567889..78569935

Molecular Weight (calculated)

47239.3 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.171

Length

435 amino acids

Sequence
(BLAST)

001: MPPSPAPAPA PAPAPSPAPK DDPTIDNVKN SSNDYAAGIF NVLSYGAVGD GVIDDTQAFK MAWDAACQVD SAILLVPKHY SFMIQSTIFT GPCKSGLIFK
101: VEGTIMPPDG PDSWPKSVSK KQWLVFYRID GMSMKGGGLI DGRGEKWWNL PCKPHKQGIN GATLPGPCDS PVAIRFFMSS NLTVQGLKIK NSPLFHFRFD
201: SCRDVHVDSL YIKAPPQSPN TDGIHIENTN DVTIRNSIIS NGDDCISIGA GCYNVDIRNM TCGPSHGISI GSLGIRNSRA CVSNITVQDS TIKYSDNGVR
301: IKTWQGGFGT VSNINFNNIR MESVRNPIIL DQYYCNTKSC ANQTSAVYIS DVIYSNIKGT YDVRSPPMHL ACSNSVPCTN LTFLDVELYP AQGQKILEPF
401: CWNAYGALMT LTIPPVFCLL EGTPQSLPSN DLDQC

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.